Aliases for LINC01344 Gene
Subcategory (RNA class) for LINC01344 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for LINC01344 Gene
- HGNC: 50554
- Entrez Gene: 400799
- Ensembl: ENSG00000228918
Summaries for LINC01344 Gene
GeneCards Summary for LINC01344 Gene
LINC01344 (Long Intergenic Non-Protein Coding RNA 1344) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC01344 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01344 Gene
Genomics for LINC01344 Gene
GeneHancer (GH) Regulatory Elements for LINC01344 Gene
Promoters and enhancers for LINC01344 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J182313 | Enhancer | 1.1 | ENCODE dbSUPER | 650.7 | -0.8 | -768 | 1.7 | HDGF ATF1 PKNOX1 FOXA2 RARA CHAMP1 EGR1 PRPF4 ZFP91 ATF7 | LINC01344 GC01P182329 | |
| GH01J182309 | Enhancer | 1.1 | ENCODE dbSUPER | 0.7 | +4.1 | 4134 | 0.6 | FOXA2 ARID4B DMAP1 ZNF48 RXRA SP5 MXD4 MIER2 REST PPARG | GLUL TEDDM1 LINC01344 YPEL5P1 | |
| GH01J182299 | Enhancer | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | +13.1 | 13069 | 3.7 | HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B YBX1 FEZF1 DMAP1 | DHX9 HMGN1P4 LAMC1 GLUL RNU6-152P RPL18P2 EIF1P3 LINC01344 YPEL5P1 | |
| GH01J182316 | Enhancer | 0.8 | Ensembl ENCODE | 0.7 | -3.8 | -3761 | 1.9 | STAT1 NFATC3 ASH1L GATA3 ZNF366 IKZF1 ZNF512 FOS | LINC01344 GC01P182329 | |
| GH01J182288 | Enhancer | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | +23.1 | 23127 | 5.3 | HDGF PKNOX1 ATF1 FOXA2 MLX ARID4B FEZF1 ZNF48 ETS1 YY1 | DHX9 LAMC1 RPL18P2 RNU6-152P GLUL HMGN1P4 LINC01344 YPEL5P1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LINC01344 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LINC01344 Gene
Genomic Locations for LINC01344 Gene
- chr1:182,129,310-182,314,061
- (GRCh38/hg38)
- Size:
- 184,752 bases
- Orientation:
- Minus strand
- chr1:182,098,445-182,283,196
- (GRCh37/hg19)
- Size:
- 184,752 bases
- Orientation:
- Minus strand
Genomic View for LINC01344 Gene
Genes around LINC01344 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q25.3 by Entrez Gene
- 1q25.3 by HGNC
- 1q25.3 by Ensembl
LINC01344 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01344 Gene
Proteins for LINC01344 Gene
Post-translational modifications for LINC01344 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LINC01344
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01344
- Origene Custom Protein Services for LINC01344
- Search GeneTex for Proteins for LINC01344
No data available for DME Specific Peptides for LINC01344 Gene
Domains & Families for LINC01344 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01344 Gene
Function for LINC01344 Gene
Phenotypes From GWAS Catalog for LINC01344 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01344
-
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for LINC01344
- VectorBuilder custom plasmid, inducible vectors for LINC01344
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01344
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01344 Gene
Localization for LINC01344 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01344 Gene
Transcripts for LINC01344 Gene
mRNA/cDNA for LINC01344 Gene
- (5) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000608183 2631 bps (uc057ntc.1)
- ENST00000420760 261 bps (uc057ntd.1)
- ENST00000449842 571 bps (uc031vgr.2)
- (4) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for LINC01344
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for LINC01344
- VectorBuilder custom plasmid, inducible vectors for LINC01344
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01344
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for LINC01344 Gene
NURSA nuclear receptor signaling pathways regulating expression of LINC01344 Gene:
LINC01344
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01344 Gene
Orthologs for LINC01344 Gene
No data available for Orthologs for LINC01344 Gene
Paralogs for LINC01344 Gene
No data available for Paralogs for LINC01344 Gene
Variants for LINC01344 Gene
| SNP ID | Clin | Chr 01 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000030997 | -- | 182,262,449(-) | G/A | intron_variant | |
| rs1000034460 | -- | 182,267,758(-) | T/G | intron_variant | |
| rs1000065977 | -- | 182,242,957(-) | G/C | intron_variant | |
| rs1000071365 | -- | 182,309,446(-) | A/G | intron_variant | |
| rs1000096154 | -- | 182,284,306(-) | G/A | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv548358 | CNV | gain | 21841781 |
| nsv523295 | CNV | loss | 19592680 |
| nsv1145384 | CNV | deletion | 24896259 |
| esv3588099 | CNV | loss | 21293372 |
| esv3588098 | CNV | loss | 21293372 |
| esv3588097 | CNV | loss | 21293372 |
| esv3348817 | CNV | insertion | 20981092 |
| esv27430 | CNV | gain | 19812545 |
| esv2658469 | CNV | deletion | 23128226 |
| esv25907 | CNV | loss | 19812545 |
| esv1007138 | CNV | insertion | 20482838 |
Additional Variant Information for LINC01344 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01344
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01344 Gene
Disorders for LINC01344 Gene
Additional Disease Information for LINC01344
No disorders were found for LINC01344 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01344 Gene
Publications for LINC01344 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
Products for LINC01344 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01344
- Origene Custom Protein Services for LINC01344
- Browse OriGene Inhibitory RNA Products For LINC01344
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01344
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01344
- GenScript: Custom all cDNA clones Services for LINC01344
- GenScript Custom Purified and Recombinant Proteins Services for LINC01344
- GenScript Custom Assay Services for LINC01344
- GenScript Custom overexpressing Cell Line Services for LINC01344
- Browse GenScript CRISPR for LINC01344
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for LINC01344
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01344
- VectorBuilder custom plasmid, inducible vectors for LINC01344
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01344
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01344
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01344
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01344
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01344
Sources for LINC01344 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt