Aliases for LINC01344 Gene

Data sources for LINC01344 Gene:

Subcategory (RNA class) for LINC01344 Gene

lncRNA

Aliases for LINC01344 Gene

External Ids for LINC01344 Gene

Previous GeneCards Identifiers for LINC01344 Gene

  • GC01M182129

Summaries for LINC01344 Gene

GeneCards Summary for LINC01344 Gene

LINC01344 (Long Intergenic Non-Protein Coding RNA 1344) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01344 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01344 Gene

Genomics for LINC01344 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01344 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182243 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 250.1 +107.5 107501 1.8 ZNF217 MBD2 CUX1 ZEB2 TAL1 CTBP1 HDAC2 SMARCE1 EHMT2 PKNOX1 LINC01344 RNU6-152P RPL18P2 GLUL ENSG00000224810 piR-57965-002 lnc-RGSL1-6 ZNF648 HSALNG0008888-001
GH01J182348 Enhancer 0.7 Ensembl ENCODE 0.7 +2.4 2366 3.1 IKZF1 BCL6 ZNF148 ZMYM3 CEBPB ZNF692 KDM1A BCOR NR2F2 MGA TEDDM1 GLUL RNU6-152P RPL18P2 LINC01344 EIF1P3 ZNF648
GH01J182357 Enhancer 0.9 Ensembl ENCODE 0.4 -6.8 -6784 3.4 IKZF1 BHLHE40 ELF1 ZFP91 SMARCA4 HDAC2 FOXK2 EHMT2 ZBTB33 EGR1 RNU6-152P RPL18P2 GLUL TEDDM1 LINC01344 HSALNG0008907 ZNF648
GH01J182337 Enhancer 1 ENCODE 0.4 +14.1 14097 1.3 TBP MNT IKZF1 SMAD5 HES1 MBD2 BHLHE40 NONO ARNT ZNF395 GLUL DHX9 TEDDM1 EIF1P3 LINC01344 ZNF648
GH01J182339 Enhancer 1 ENCODE 0.4 +11.9 11895 2.3 CEBPA IKZF1 HES1 MBD2 BHLHE40 ELF1 HOMEZ THAP11 ARNT ZNF395 DHX9 GLUL TEDDM1 EIF1P3 LINC01344 ZNF648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01344 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01344 Gene

Latest Assembly
chr1:182,096,338-182,352,117
(GRCh38/hg38)
Size:
255,780 bases
Orientation:
Minus strand

Previous Assembly
chr1:182,173,080-182,283,196
(GRCh37/hg19 by Entrez Gene)
Size:
110,117 bases
Orientation:
Minus strand

chr1:182,098,445-182,283,196
(GRCh37/hg19 by Ensembl)
Size:
184,752 bases
Orientation:
Minus strand

Genomic View for LINC01344 Gene

Genes around LINC01344 on UCSC Golden Path with GeneCards custom track
LINC01344 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01344 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01344 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01344 Gene

Proteins for LINC01344 Gene

Post-translational modifications for LINC01344 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01344 Gene

Domains & Families for LINC01344 Gene

Gene Families for LINC01344 Gene

genes like me logo Genes that share domains with LINC01344: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01344 Gene

Function for LINC01344 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01344 Gene

Localization for LINC01344 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01344 Gene

Pathways & Interactions for LINC01344 Gene

PathCards logo

SuperPathways for LINC01344 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01344 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01344 Gene

Drugs & Compounds for LINC01344 Gene

No Compound Related Data Available

Transcripts for LINC01344 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01344 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CF3EB_9606 lncRNA 263 4

Ensembl: ENST00000420760 (view in UCSC) ,

LncBook: HSALNT0018420,

LNCipedia: LINC01344:4,

NONCODE: NONHSAT008309.2,

URS000055F6C0_9606 lncRNA 2648 3

Ensembl: ENST00000608183 (view in UCSC) ,

LNCipedia: LINC01344:3,

NONCODE: NONHSAT008306.2,

URS0000EEADAD_9606 lncRNA 2299 1

Ensembl: ENST00000653755 (view in UCSC) ,

URS0000EEDA76_9606 lncRNA 1196 1

Ensembl: ENST00000449842 (view in UCSC) ,

URS0000EF4B66_9606 lncRNA 1141 1

Ensembl: ENST00000658912 (view in UCSC) ,

LINC01344 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01344 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01344 Gene

No ASD Table

Relevant External Links for LINC01344 Gene

GeneLoc Exon Structure for
LINC01344

Expression for LINC01344 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01344 Gene

genes like me logo Genes that share expression patterns with LINC01344: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01344 Gene

Orthologs for LINC01344 Gene

Evolution for LINC01344 Gene

ENSEMBL:
Gene Tree for LINC01344 (if available)
TreeFam:
Gene Tree for LINC01344 (if available)

No data available for Orthologs for LINC01344 Gene

Paralogs for LINC01344 Gene

No data available for Paralogs for LINC01344 Gene

Variants for LINC01344 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01344 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01344 Gene

Variant ID Type Subtype PubMed ID
esv1007138 CNV insertion 20482838
esv25907 CNV loss 19812545
esv2658469 CNV deletion 23128226
esv27430 CNV gain 19812545
esv3348817 CNV insertion 20981092
esv3588097 CNV loss 21293372
esv3588098 CNV loss 21293372
esv3588099 CNV loss 21293372
nsv1145384 CNV deletion 24896259
nsv523295 CNV loss 19592680
nsv548358 CNV gain 21841781

Additional Variant Information for LINC01344 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01344

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01344 Gene

Disorders for LINC01344 Gene

Additional Disease Information for LINC01344

No disorders were found for LINC01344 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01344 Gene

Publications for LINC01344 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01344 Gene

Sources for LINC01344 Gene