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Aliases for LINC01344 Gene

Subcategory (RNA class) for LINC01344 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01344 Gene

  • Long Intergenic Non-Protein Coding RNA 1344 2 3 5
  • GS1-122H1.2 3

External Ids for LINC01344 Gene

Summaries for LINC01344 Gene

GeneCards Summary for LINC01344 Gene

LINC01344 (Long Intergenic Non-Protein Coding RNA 1344) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01344 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01344 Gene

Genomics for LINC01344 Gene

GeneHancer (GH) Regulatory Elements for LINC01344 Gene

Promoters and enhancers for LINC01344 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I182313 Enhancer 1.1 ENCODE dbSUPER 550.8 -0.8 -768 1.7 HDGF ATF1 PKNOX1 FOXA2 RARA CHAMP1 EGR1 ATF7 EGR2 SMARCA5 LINC01344 GC01P182329
GH01I182309 Enhancer 1.1 ENCODE dbSUPER 0.8 +4.1 4134 0.6 ELF3 FOXA2 ARID4B DMAP1 ZNF48 RAD21 RARA EGR1 THAP11 MIXL1 GLUL TEDDM1 LINC01344 YPEL5P1
GH01I182299 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.1 13069 3.7 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B YBX1 FEZF1 DMAP1 DHX9 HMGN1P4 LAMC1 GLUL RPL18P2 RNU6-152P EIF1P3 LINC01344 YPEL5P1
GH01I182316 Enhancer 0.8 Ensembl ENCODE 0.8 -3.8 -3761 1.9 STAT1 NFATC3 ASH1L GATA3 ZNF366 IKZF1 ZNF512 FOS LINC01344 GC01P182329
GH01I182288 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.1 23127 5.3 HDGF PKNOX1 ATF1 FOXA2 MLX ARID4B FEZF1 ZNF48 ETS1 YY1 DHX9 LAMC1 RNU6-152P RPL18P2 GLUL HMGN1P4 LINC01344 YPEL5P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01344 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01344 Gene

Genomic Locations for LINC01344 Gene
chr1:182,129,310-182,314,061
(GRCh38/hg38)
Size:
184,752 bases
Orientation:
Minus strand
chr1:182,098,445-182,283,196
(GRCh37/hg19)

Genomic View for LINC01344 Gene

Genes around LINC01344 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01344 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01344 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01344 Gene

Proteins for LINC01344 Gene

Post-translational modifications for LINC01344 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01344 Gene

Domains & Families for LINC01344 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01344 Gene

Function for LINC01344 Gene

Phenotypes From GWAS Catalog for LINC01344 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01344 Gene

Localization for LINC01344 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01344 Gene

Pathways & Interactions for LINC01344 Gene

SuperPathways for LINC01344 Gene

No Data Available

Interacting Proteins for LINC01344 Gene

Gene Ontology (GO) - Biological Process for LINC01344 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01344 Gene

Drugs & Compounds for LINC01344 Gene

No Compound Related Data Available

Transcripts for LINC01344 Gene

mRNA/cDNA for LINC01344 Gene

(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01344 Gene

No ASD Table

Relevant External Links for LINC01344 Gene

GeneLoc Exon Structure for
LINC01344
ECgene alternative splicing isoforms for
LINC01344

Expression for LINC01344 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01344 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01344 Gene:

LINC01344
genes like me logo Genes that share expression patterns with LINC01344: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01344 Gene

Orthologs for LINC01344 Gene

Evolution for LINC01344 Gene

ENSEMBL:
Gene Tree for LINC01344 (if available)
TreeFam:
Gene Tree for LINC01344 (if available)

No data available for Orthologs for LINC01344 Gene

Paralogs for LINC01344 Gene

No data available for Paralogs for LINC01344 Gene

Variants for LINC01344 Gene

Sequence variations from dbSNP and Humsavar for LINC01344 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000030997 -- 182,262,449(-) G/A intron_variant
rs1000034460 -- 182,267,758(-) T/G intron_variant
rs1000065977 -- 182,242,957(-) G/C intron_variant
rs1000071365 -- 182,309,446(-) A/G intron_variant
rs1000096154 -- 182,284,306(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01344 Gene

Variant ID Type Subtype PubMed ID
esv1007138 CNV insertion 20482838
esv25907 CNV loss 19812545
esv2658469 CNV deletion 23128226
esv27430 CNV gain 19812545
esv3348817 CNV insertion 20981092
esv3588097 CNV loss 21293372
esv3588098 CNV loss 21293372
esv3588099 CNV loss 21293372
nsv1145384 CNV deletion 24896259
nsv523295 CNV loss 19592680
nsv548358 CNV gain 21841781

Additional Variant Information for LINC01344 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01344

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01344 Gene

Disorders for LINC01344 Gene

Additional Disease Information for LINC01344

No disorders were found for LINC01344 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01344 Gene

Publications for LINC01344 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01344 Gene

Sources for LINC01344 Gene

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