Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01343 Gene

Subcategory (RNA class) for LINC01343 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01343 Gene

  • Long Intergenic Non-Protein Coding RNA 1343 2 3 5

External Ids for LINC01343 Gene

Summaries for LINC01343 Gene

GeneCards Summary for LINC01343 Gene

LINC01343 (Long Intergenic Non-Protein Coding RNA 1343) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01343 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01343 Gene

Genomics for LINC01343 Gene

GeneHancer (GH) Regulatory Elements for LINC01343 Gene

Promoters and enhancers for LINC01343 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I038172 Enhancer 0.7 ENCODE 0.3 +41.1 41084 1.7 PKNOX1 SMAD1 RB1 EBF1 RELA ATF7 IKZF2 RUNX3 SRF SMARCA5 LOC105378654 LINC01343
GH01I038191 Enhancer 0.5 VISTA 0.3 +23.2 23236 0.8 PKNOX1 NR2F1 IKZF1 EBF1 SPI1 LINC01343 LOC105378654
GH01I038182 Enhancer 0.5 ENCODE 0.3 +31.5 31533 1.1 GLIS1 BACH1 CTBP2 PRDM10 LINC01343 LOC105378654
GH01I038197 Enhancer 0.3 VISTA 0.4 +17.0 17014 1.2 RCOR1 LINC01343 LOC105378654
GH01I038152 Enhancer 0.6 ENCODE 0.2 +61.9 61863 0.2 CTCF SRF PKNOX1 ZNF687 MNT RAD21 RCOR1 IKZF2 MGA ENSG00000224592 POU3F1 LOC105378654 LINC01343
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01343 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01343 Gene

Genomic Locations for LINC01343 Gene
chr1:38,209,034-38,214,767
(GRCh38/hg38)
Size:
5,734 bases
Orientation:
Minus strand
chr1:38,674,706-38,680,439
(GRCh37/hg19)

Genomic View for LINC01343 Gene

Genes around LINC01343 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01343 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01343 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01343 Gene

Proteins for LINC01343 Gene

Post-translational modifications for LINC01343 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01343 Gene

Domains & Families for LINC01343 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01343 Gene

Function for LINC01343 Gene

Phenotypes From GWAS Catalog for LINC01343 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01343 Gene

Localization for LINC01343 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01343 Gene

Pathways & Interactions for LINC01343 Gene

SuperPathways for LINC01343 Gene

No Data Available

Interacting Proteins for LINC01343 Gene

Gene Ontology (GO) - Biological Process for LINC01343 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01343 Gene

Drugs & Compounds for LINC01343 Gene

No Compound Related Data Available

Transcripts for LINC01343 Gene

mRNA/cDNA for LINC01343 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01343 Gene

No ASD Table

Relevant External Links for LINC01343 Gene

GeneLoc Exon Structure for
LINC01343
ECgene alternative splicing isoforms for
LINC01343

Expression for LINC01343 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01343 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01343 Gene:

LINC01343
genes like me logo Genes that share expression patterns with LINC01343: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01343 Gene

Orthologs for LINC01343 Gene

Evolution for LINC01343 Gene

ENSEMBL:
Gene Tree for LINC01343 (if available)
TreeFam:
Gene Tree for LINC01343 (if available)

No data available for Orthologs for LINC01343 Gene

Paralogs for LINC01343 Gene

No data available for Paralogs for LINC01343 Gene

Variants for LINC01343 Gene

Sequence variations from dbSNP and Humsavar for LINC01343 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000204650 -- 38,209,581(-) G/A/C non_coding_transcript_variant
rs1000447087 -- 38,209,364(-) C/A non_coding_transcript_variant
rs1000481990 -- 38,215,793(-) C/G upstream_transcript_variant
rs1000548509 -- 38,211,068(-) A/G intron_variant
rs1000590572 -- 38,212,885(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01343 Gene

Variant ID Type Subtype PubMed ID
nsv834757 CNV gain 17160897

Additional Variant Information for LINC01343 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01343

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01343 Gene

Disorders for LINC01343 Gene

Additional Disease Information for LINC01343

No disorders were found for LINC01343 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01343 Gene

Publications for LINC01343 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01343 Gene

Sources for LINC01343 Gene

Content
Loading form....