Aliases for LINC01341 Gene

Subcategory (RNA class) for LINC01341 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01341 Gene

  • Long Intergenic Non-Protein Coding RNA 1341 2 3 5
  • LINC01341 2 168
  • NONHSAG004902 92
  • HSALNG0012202 167

External Ids for LINC01341 Gene

Summaries for LINC01341 Gene

GeneCards Summary for LINC01341 Gene

LINC01341 (Long Intergenic Non-Protein Coding RNA 1341) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01341 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01341 Gene

Genomics for LINC01341 Gene

GeneHancer (GH) Regulatory Elements for LINC01341 Gene

Promoters and enhancers for LINC01341 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J246564 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -206.7 -206728 10.2 FOXK2 ZBTB40 ZNF217 EP300 SIN3A TCF12 NRF1 MYC POLR2G GTF2E2 CNST TFB2M SMYD3 LINC01341 AHCTF1 ENSG00000225300
GH01J246827 Enhancer 0.6 Ensembl 18.8 +51.8 51792 0.8 CUX1 TEAD1 TBX3 CTBP1 FOXA2 FOXA1 RARA TEAD3 GATA3 SOX5 RF00017-554 LINC01341 AHCTF1 ENSG00000252011 KIF28P
GH01J246789 Promoter/Enhancer 0.8 Ensembl CraniofacialAtlas 13.5 +13.4 13385 1.4 POLR2G ZBTB7A PCBP1 AGO2 AGO1 LINC01341 ENSG00000260855 SCCPDH lnc-AHCTF1-1 ENSG00000235386 KIF28P
GH01J246959 Enhancer 1 FANTOM5 ENCODE 10.5 +184.3 184340 1.1 TRIM22 ZNF316 CREB3L1 CTCF IRF1 CEBPG MEF2B NFE2 BCOR ZNF318 AHCTF1 ZNF669 KIF28P LINC01341 ZNF496 NLRP3 piR-30821-004 ZNF695 ZNF670-ZNF695
GH01J246794 Enhancer 0.7 FANTOM5 ENCODE 13.3 +19.2 19182 1.3 USF1 POLR2A TCF12 NR2F1 BHLHE40 USF2 REST SMARCA4 EP300 FOS LINC01341 SCCPDH KIF28P ZNF695 lnc-AHCTF1-1 ENSG00000235386
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01341 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01341 Gene

Genomic Locations for LINC01341 Gene
chr1:246,775,814-246,792,713
(GRCh38/hg38)
Size:
16,900 bases
Orientation:
Plus strand
chr1:246,939,315-246,955,687
(GRCh37/hg19)
Size:
16,373 bases
Orientation:
Plus strand

Genomic View for LINC01341 Gene

Genes around LINC01341 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01341 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01341 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01341 Gene

Proteins for LINC01341 Gene

Post-translational modifications for LINC01341 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01341 Gene

Domains & Families for LINC01341 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01341 Gene

Function for LINC01341 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01341

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01341 Gene

Localization for LINC01341 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01341 Gene

Pathways & Interactions for LINC01341 Gene

PathCards logo

SuperPathways for LINC01341 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01341 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01341 Gene

Drugs & Compounds for LINC01341 Gene

No Compound Related Data Available

Transcripts for LINC01341 Gene

mRNA/cDNA for LINC01341 Gene

29 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
16 NONCODE transcripts :
16 LncBook transcripts :
22 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01341

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01341 Gene

No ASD Table

Relevant External Links for LINC01341 Gene

GeneLoc Exon Structure for
LINC01341

Expression for LINC01341 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01341

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01341 Gene

Orthologs for LINC01341 Gene

Evolution for LINC01341 Gene

ENSEMBL:
Gene Tree for LINC01341 (if available)
TreeFam:
Gene Tree for LINC01341 (if available)

No data available for Orthologs for LINC01341 Gene

Paralogs for LINC01341 Gene

No data available for Paralogs for LINC01341 Gene

Variants for LINC01341 Gene

Additional dbSNP identifiers (rs#s) for LINC01341 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01341 Gene

Variant ID Type Subtype PubMed ID
esv2667587 CNV deletion 23128226
esv2762192 CNV gain 21179565
esv3575872 CNV gain 25503493
nsv1006262 CNV gain 25217958
nsv474344 CNV novel sequence insertion 20440878
nsv509768 CNV insertion 20534489
nsv523531 CNV gain 19592680
nsv525154 CNV loss 19592680
nsv549545 CNV loss 21841781

Additional Variant Information for LINC01341 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01341

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01341 Gene

Disorders for LINC01341 Gene

Additional Disease Information for LINC01341

No disorders were found for LINC01341 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01341 Gene

Publications for LINC01341 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01341 Gene

Sources for LINC01341 Gene