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Aliases for LINC01341 Gene

Subcategory (RNA class) for LINC01341 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01341 Gene

  • Long Intergenic Non-Protein Coding RNA 1341 2 3 5

External Ids for LINC01341 Gene

Summaries for LINC01341 Gene

GeneCards Summary for LINC01341 Gene

LINC01341 (Long Intergenic Non-Protein Coding RNA 1341) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01341 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01341 Gene

Genomics for LINC01341 Gene

GeneHancer (GH) Regulatory Elements for LINC01341 Gene

Promoters and enhancers for LINC01341 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J246959 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.5 +184.2 184182 1.2 BCOR HDAC1 CTCF MEIS2 ATF1 TEAD4 BACH1 CEBPG RAD21 ZNF316 AHCTF1 ZNF669 ZNF670-ZNF695 ZNF124 KIF28P LINC01341 ZNF496 NLRP3 ZNF695
GH01J246564 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.5 -206.5 -206527 9.4 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 YY1 CNST TFB2M ZNF669 ZNF670-ZNF695 AHCTF1 ZNF496 ZNF124 ENSG00000227671 SMYD3 LINC01341
GH01J246781 Enhancer 0.9 Ensembl ENCODE 10.6 +6.2 6247 2.1 SOX13 MAX RARA TEAD3 ZNF316 POLR2A TRIM24 NFE2 ATF7 RUNX3 LINC01341 ENSG00000260855 SCCPDH ENSG00000235386 KIF28P
GH01J246794 Enhancer 0.7 FANTOM5 ENCODE 13.2 +19.0 18983 1.3 SREBF1 USF1 POLR2A BHLHE40 USF2 LINC01341 SCCPDH KIF28P ZNF695 ENSG00000235386
GH01J246595 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 5.5 -178.3 -178252 5.1 FOXA2 MAX MZF1 CEBPG BMI1 RAD21 GATA3 RFX1 L3MBTL2 RXRA CNST LINC01341 SMYD3 ENSG00000225300 LOC105373271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01341 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01341 Gene

Genomic Locations for LINC01341 Gene
chr1:246,776,013-246,792,385
(GRCh38/hg38)
Size:
16,373 bases
Orientation:
Plus strand
chr1:246,939,315-246,955,687
(GRCh37/hg19)
Size:
16,373 bases
Orientation:
Plus strand

Genomic View for LINC01341 Gene

Genes around LINC01341 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01341 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01341 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01341 Gene

Proteins for LINC01341 Gene

Post-translational modifications for LINC01341 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01341 Gene

Domains & Families for LINC01341 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01341 Gene

Function for LINC01341 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01341

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01341 Gene

Localization for LINC01341 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01341 Gene

Pathways & Interactions for LINC01341 Gene

SuperPathways for LINC01341 Gene

No Data Available

Interacting Proteins for LINC01341 Gene

Gene Ontology (GO) - Biological Process for LINC01341 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01341 Gene

Drugs & Compounds for LINC01341 Gene

No Compound Related Data Available

Transcripts for LINC01341 Gene

mRNA/cDNA for LINC01341 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01341

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01341 Gene

No ASD Table

Relevant External Links for LINC01341 Gene

GeneLoc Exon Structure for
LINC01341
ECgene alternative splicing isoforms for
LINC01341

Expression for LINC01341 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01341 Gene:

LINC01341
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01341 Gene

Orthologs for LINC01341 Gene

Evolution for LINC01341 Gene

ENSEMBL:
Gene Tree for LINC01341 (if available)
TreeFam:
Gene Tree for LINC01341 (if available)

No data available for Orthologs for LINC01341 Gene

Paralogs for LINC01341 Gene

No data available for Paralogs for LINC01341 Gene

Variants for LINC01341 Gene

Sequence variations from dbSNP and Humsavar for LINC01341 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000094883 -- 246,788,471(+) T/C upstream_transcript_variant
rs1001359386 -- 246,788,878(+) CACACACACA/CACACACA upstream_transcript_variant
rs1001560501 -- 246,789,909(+) G/A intron_variant
rs1002294393 -- 246,788,698(+) G/A upstream_transcript_variant
rs1002310880 -- 246,789,645(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01341 Gene

Variant ID Type Subtype PubMed ID
nsv549545 CNV loss 21841781
nsv525154 CNV loss 19592680
nsv523531 CNV gain 19592680
nsv509768 CNV insertion 20534489
nsv474344 CNV novel sequence insertion 20440878
nsv1006262 CNV gain 25217958
esv3575872 CNV gain 25503493
esv2762192 CNV gain 21179565
esv2667587 CNV deletion 23128226

Additional Variant Information for LINC01341 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01341

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01341 Gene

Disorders for LINC01341 Gene

Additional Disease Information for LINC01341

No disorders were found for LINC01341 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01341 Gene

Publications for LINC01341 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01341 Gene

Sources for LINC01341 Gene

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