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Aliases for LINC01340 Gene

Subcategory (RNA class) for LINC01340 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01340 Gene

  • Long Intergenic Non-Protein Coding RNA 1340 2 3 5

External Ids for LINC01340 Gene

Summaries for LINC01340 Gene

GeneCards Summary for LINC01340 Gene

LINC01340 (Long Intergenic Non-Protein Coding RNA 1340) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01340 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01340 Gene

Genomics for LINC01340 Gene

GeneHancer (GH) Regulatory Elements for LINC01340 Gene

Promoters and enhancers for LINC01340 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J097547 Enhancer 0.9 Ensembl ENCODE 0.3 +43.6 43595 1.4 PKNOX1 BACH1 BMI1 BATF IRF4 POLR2A EED ATF7 ETV6 IKZF2 LINC02234 LINC01340 MTCYBP40
GH05J097534 Enhancer 0.8 Ensembl ENCODE 0.3 +29.7 29705 0.4 CTCF FOXA2 HLF TRIM22 CEBPB CEBPG RAD21 CEBPA SMC3 ZNF143 LINC01340 MTCYBP40
GH05J097478 Enhancer 0.3 ENCODE 0.3 -26.0 -26002 0.5 NR2F2 RIOK2 GC05M097450 LINC01340
GH05J097554 Enhancer 0.4 ENCODE 0.2 +50.7 50709 1.5 STAT1 ZNF623 LINC02234 LINC01340 MTCYBP40
GH05J097528 Enhancer 0.2 ENCODE 0.3 +24.5 24520 1.6 LINC01340 MTCYBP40
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01340 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01340 Gene

Genomic Locations for LINC01340 Gene
chr5:97,504,696-97,671,051
(GRCh38/hg38)
Size:
166,356 bases
Orientation:
Plus strand
chr5:96,840,400-97,006,750
(GRCh37/hg19)
Size:
166,351 bases
Orientation:
Plus strand

Genomic View for LINC01340 Gene

Genes around LINC01340 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01340 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01340 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01340 Gene

Proteins for LINC01340 Gene

Post-translational modifications for LINC01340 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01340 Gene

Domains & Families for LINC01340 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01340 Gene

Function for LINC01340 Gene

Phenotypes From GWAS Catalog for LINC01340 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01340 Gene

Localization for LINC01340 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01340 Gene

Pathways & Interactions for LINC01340 Gene

SuperPathways for LINC01340 Gene

No Data Available

Interacting Proteins for LINC01340 Gene

Gene Ontology (GO) - Biological Process for LINC01340 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01340 Gene

Drugs & Compounds for LINC01340 Gene

No Compound Related Data Available

Transcripts for LINC01340 Gene

mRNA/cDNA for LINC01340 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01340 Gene

No ASD Table

Relevant External Links for LINC01340 Gene

GeneLoc Exon Structure for
LINC01340
ECgene alternative splicing isoforms for
LINC01340

Expression for LINC01340 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01340 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01340 Gene:

LINC01340
genes like me logo Genes that share expression patterns with LINC01340: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01340 Gene

Orthologs for LINC01340 Gene

Evolution for LINC01340 Gene

ENSEMBL:
Gene Tree for LINC01340 (if available)
TreeFam:
Gene Tree for LINC01340 (if available)

No data available for Orthologs for LINC01340 Gene

Paralogs for LINC01340 Gene

No data available for Paralogs for LINC01340 Gene

Variants for LINC01340 Gene

Sequence variations from dbSNP and Humsavar for LINC01340 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000006875 -- 97,510,766(+) G/A intron_variant
rs1000023695 -- 97,603,200(+) T/C intron_variant
rs1000029781 -- 97,644,671(+) A/C intron_variant
rs1000044576 -- 97,638,389(+) G/C intron_variant
rs1000085622 -- 97,542,995(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01340 Gene

Variant ID Type Subtype PubMed ID
dgv25e196 CNV deletion 17116639
dgv712n27 CNV loss 19166990
dgv9937n54 CNV loss 21841781
dgv9938n54 CNV loss 21841781
esv2730494 CNV deletion 23290073
esv2763470 CNV loss 21179565
esv3388715 CNV insertion 20981092
esv3570259 CNV loss 25503493
esv3890674 CNV gain 25118596
nsv1020125 CNV gain 25217958
nsv1031429 CNV loss 25217958
nsv1111300 CNV tandem duplication 24896259
nsv1144115 CNV deletion 24896259
nsv1145848 CNV duplication 26484159
nsv472726 CNV novel sequence insertion 20440878
nsv4926 CNV deletion 18451855
nsv509077 CNV insertion 20534489
nsv518575 CNV loss 19592680
nsv527650 CNV loss 19592680
nsv598962 CNV gain 21841781
nsv830416 CNV gain 17160897
nsv830417 CNV loss 17160897

Additional Variant Information for LINC01340 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01340

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01340 Gene

Disorders for LINC01340 Gene

Additional Disease Information for LINC01340

No disorders were found for LINC01340 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01340 Gene

Publications for LINC01340 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 58

Products for LINC01340 Gene

Sources for LINC01340 Gene

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