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Aliases for LINC01339 Gene

Subcategory (RNA class) for LINC01339 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01339 Gene

  • Long Intergenic Non-Protein Coding RNA 1339 2 3 5

External Ids for LINC01339 Gene

Summaries for LINC01339 Gene

GeneCards Summary for LINC01339 Gene

LINC01339 (Long Intergenic Non-Protein Coding RNA 1339) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01339 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01339 Gene

Genomics for LINC01339 Gene

GeneHancer (GH) Regulatory Elements for LINC01339 Gene

Promoters and enhancers for LINC01339 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J090472 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 14.6 -185.4 -185426 5.5 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 ZNF610 GLIS1 NBN MBLAC2 LINC01339 ENSG00000214942 POLR3G ADGRV1
GH05J090527 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 -239.4 -239406 3.2 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 LYSMD3 ADGRV1 LINC01339 ENSG00000214942 POLR3G
GH05J090222 Enhancer 0.6 ENCODE 0.2 +67.9 67942 0.1 SMARCE1 PKNOX1 JUN DPF2 MNT FOXA1 ZNF217 CTBP1 GATA3 JUND GC05P090220 GC05P090210 GC05M090194 LINC01339
GH05J090208 Enhancer 0.6 ENCODE 0.2 +81.6 81560 0.5 PKNOX1 L3MBTL2 NFRKB NRF1 CEBPB CTBP1 IKZF1 EHMT2 NR2C2 GC05P090210 GC05M090194 LINC01339 GC05M090101
GH05J090250 Enhancer 0.3 FANTOM5 0.3 +39.8 39778 0.4 ATF2 GC05M090194 GC05P090220 LINC01339
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01339 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01339 Gene

Genomic Locations for LINC01339 Gene
131,733 bases
Minus strand
131,733 bases
Minus strand

Genomic View for LINC01339 Gene

Genes around LINC01339 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01339 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01339 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01339 Gene

Proteins for LINC01339 Gene

Post-translational modifications for LINC01339 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01339 Gene

Domains & Families for LINC01339 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01339 Gene

Function for LINC01339 Gene

Phenotypes From GWAS Catalog for LINC01339 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01339 Gene

Localization for LINC01339 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01339 Gene

Pathways & Interactions for LINC01339 Gene

SuperPathways for LINC01339 Gene

No Data Available

Interacting Proteins for LINC01339 Gene

Gene Ontology (GO) - Biological Process for LINC01339 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01339 Gene

Drugs & Compounds for LINC01339 Gene

No Compound Related Data Available

Transcripts for LINC01339 Gene

mRNA/cDNA for LINC01339 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01339 Gene

No ASD Table

Relevant External Links for LINC01339 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01339 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01339 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01339 Gene:

genes like me logo Genes that share expression patterns with LINC01339: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01339 Gene

Orthologs for LINC01339 Gene

Evolution for LINC01339 Gene

Gene Tree for LINC01339 (if available)
Gene Tree for LINC01339 (if available)

No data available for Orthologs for LINC01339 Gene

Paralogs for LINC01339 Gene

No data available for Paralogs for LINC01339 Gene

Variants for LINC01339 Gene

Sequence variations from dbSNP and Humsavar for LINC01339 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000010461 -- 90,165,731(-) T/C intron_variant
rs1000031452 -- 90,241,518(-) A/C intron_variant
rs1000042536 -- 90,185,309(-) A/G intron_variant
rs1000047659 -- 90,234,964(-) G/A intron_variant
rs1000089223 -- 90,192,484(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01339 Gene

Variant ID Type Subtype PubMed ID
esv2763468 CNV loss 21179565
nsv477608 CNV novel sequence insertion 20440878
nsv4912 CNV insertion 18451855
nsv830391 CNV loss 17160897
nsv830393 CNV gain 17160897

Additional Variant Information for LINC01339 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01339 Gene

Disorders for LINC01339 Gene

Additional Disease Information for LINC01339

No disorders were found for LINC01339 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01339 Gene

Publications for LINC01339 Gene

  1. Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia. (PMID: 19734900) Rung J … Sladek R (Nature genetics 2009) 3 58

Products for LINC01339 Gene

Sources for LINC01339 Gene

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