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Aliases for LINC01338 Gene

Subcategory (RNA class) for LINC01338 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01338 Gene

  • Long Intergenic Non-Protein Coding RNA 1338 2 3 5

External Ids for LINC01338 Gene

Summaries for LINC01338 Gene

GeneCards Summary for LINC01338 Gene

LINC01338 (Long Intergenic Non-Protein Coding RNA 1338) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01338 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01338 Gene

Genomics for LINC01338 Gene

GeneHancer (GH) Regulatory Elements for LINC01338 Gene

Promoters and enhancers for LINC01338 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J082858 Enhancer 0.5 FANTOM5 ENCODE 650.7 +1.2 1154 1 EZH2 LINC01338 MIR3977
GH05J082885 Enhancer 0.7 Ensembl 0.3 -26.1 -26052 0.6 CTCF PKNOX1 KLF17 FEZF1 BATF RAD21 ZKSCAN1 CTBP1 ZSCAN5C ATF7 LINC01338 LOC105379051
GH05J082856 Enhancer 0.2 ENCODE 0.7 +3.3 3297 1.1 LINC01338 MIR3977
GH05J082872 Enhancer 0.3 Ensembl 0.4 -12.7 -12665 0.2 FOXA2 LINC01338 LOC105379051
GH05J082911 Enhancer 0.2 ENCODE 0.2 -52.2 -52236 1.5 LOC105379051 LINC01338
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01338 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01338 Gene

Genomic Locations for LINC01338 Gene
chr5:82,850,864-82,859,836
(GRCh38/hg38)
Size:
8,973 bases
Orientation:
Minus strand

Genomic View for LINC01338 Gene

Genes around LINC01338 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01338 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01338 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01338 Gene

Proteins for LINC01338 Gene

Post-translational modifications for LINC01338 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01338 Gene

Domains & Families for LINC01338 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01338 Gene

Function for LINC01338 Gene

Phenotypes From GWAS Catalog for LINC01338 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01338 Gene

Localization for LINC01338 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01338 Gene

Pathways & Interactions for LINC01338 Gene

SuperPathways for LINC01338 Gene

No Data Available

Interacting Proteins for LINC01338 Gene

Gene Ontology (GO) - Biological Process for LINC01338 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01338 Gene

Drugs & Compounds for LINC01338 Gene

No Compound Related Data Available

Transcripts for LINC01338 Gene

mRNA/cDNA for LINC01338 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01338 Gene

No ASD Table

Relevant External Links for LINC01338 Gene

GeneLoc Exon Structure for
LINC01338
ECgene alternative splicing isoforms for
LINC01338

Expression for LINC01338 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01338 Gene:

LINC01338
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01338 Gene

Orthologs for LINC01338 Gene

Evolution for LINC01338 Gene

ENSEMBL:
Gene Tree for LINC01338 (if available)
TreeFam:
Gene Tree for LINC01338 (if available)

No data available for Orthologs for LINC01338 Gene

Paralogs for LINC01338 Gene

No data available for Paralogs for LINC01338 Gene

Variants for LINC01338 Gene

Sequence variations from dbSNP and Humsavar for LINC01338 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000188022 -- 82,853,023(-) C/T intron_variant
rs1000241168 -- 82,858,969(-) T/C intron_variant
rs1000647108 -- 82,858,693(-) T/A intron_variant
rs1000866491 -- 82,859,853(-) C/T upstream_transcript_variant
rs1000891908 -- 82,855,944(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01338 Gene

Variant ID Type Subtype PubMed ID
esv3570237 CNV loss 25503493

Additional Variant Information for LINC01338 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01338

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01338 Gene

Disorders for LINC01338 Gene

Additional Disease Information for LINC01338

No disorders were found for LINC01338 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01338 Gene

Publications for LINC01338 Gene

No publications were found for LINC01338 Gene.

Products for LINC01338 Gene

Sources for LINC01338 Gene

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