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Aliases for LINC01337 Gene

Subcategory (RNA class) for LINC01337 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01337 Gene

  • Long Intergenic Non-Protein Coding RNA 1337 2 3 5
  • TCONS_00009713 3
  • CTC-325J23.3 3

External Ids for LINC01337 Gene

Summaries for LINC01337 Gene

GeneCards Summary for LINC01337 Gene

LINC01337 (Long Intergenic Non-Protein Coding RNA 1337) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01337 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01337 Gene

Genomics for LINC01337 Gene

GeneHancer (GH) Regulatory Elements for LINC01337 Gene

Promoters and enhancers for LINC01337 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J080623 Enhancer 0.7 Ensembl 650.7 -1.5 -1477 0.8 ELF3 ZNF146 TFAP4 FOXA2 MZF1 FEZF1 ZNF384 THRB HOMEZ ZNF362 LINC01337 MSH3 ENSG00000249655
GH05J080179 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +434.7 434668 17.2 PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 YY1 SLC30A9 SERINC5 TENT2 ENSG00000251675 MTX3 CTD-2201I18.1 THBS4 DHFR LINC01337 GC05P080147
GH05J080629 Enhancer 0.3 Ensembl 0.4 -7.3 -7277 0.4 PRDM1 ENSG00000249655 DHFR LINC01337
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01337 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01337 Gene

Genomic Locations for LINC01337 Gene
chr5:80,608,620-80,622,524
(GRCh38/hg38)
Size:
13,905 bases
Orientation:
Minus strand
chr5:79,904,442-79,918,343
(GRCh37/hg19)
Size:
13,902 bases
Orientation:
Minus strand

Genomic View for LINC01337 Gene

Genes around LINC01337 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01337 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01337 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01337 Gene

Proteins for LINC01337 Gene

Post-translational modifications for LINC01337 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01337 Gene

Domains & Families for LINC01337 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01337 Gene

Function for LINC01337 Gene

Phenotypes From GWAS Catalog for LINC01337 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01337 Gene

Localization for LINC01337 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01337 Gene

Pathways & Interactions for LINC01337 Gene

SuperPathways for LINC01337 Gene

No Data Available

Interacting Proteins for LINC01337 Gene

Gene Ontology (GO) - Biological Process for LINC01337 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01337 Gene

Drugs & Compounds for LINC01337 Gene

No Compound Related Data Available

Transcripts for LINC01337 Gene

mRNA/cDNA for LINC01337 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01337 Gene

No ASD Table

Relevant External Links for LINC01337 Gene

GeneLoc Exon Structure for
LINC01337
ECgene alternative splicing isoforms for
LINC01337

Expression for LINC01337 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01337 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01337 Gene:

LINC01337
genes like me logo Genes that share expression patterns with LINC01337: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01337 Gene

Orthologs for LINC01337 Gene

Evolution for LINC01337 Gene

ENSEMBL:
Gene Tree for LINC01337 (if available)
TreeFam:
Gene Tree for LINC01337 (if available)

No data available for Orthologs for LINC01337 Gene

Paralogs for LINC01337 Gene

No data available for Paralogs for LINC01337 Gene

Variants for LINC01337 Gene

Sequence variations from dbSNP and Humsavar for LINC01337 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000207963 -- 80,612,337(-) A/G intron_variant
rs1000525731 -- 80,611,818(-) T/C intron_variant
rs1000618986 -- 80,611,446(-) C/T intron_variant
rs1000702151 -- 80,618,129(-) G/A intron_variant
rs1000990667 -- 80,618,569(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01337 Gene

Variant ID Type Subtype PubMed ID
nsv513244 CNV loss 21212237
nsv483112 CNV loss 15286789
esv3605579 CNV loss 21293372
esv3566163 CNV deletion 23714750
esv2730369 CNV deletion 23290073
esv2730368 CNV deletion 23290073
esv2657582 CNV deletion 23128226

Additional Variant Information for LINC01337 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01337

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01337 Gene

Disorders for LINC01337 Gene

Additional Disease Information for LINC01337

No disorders were found for LINC01337 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01337 Gene

Publications for LINC01337 Gene

No publications were found for LINC01337 Gene.

Products for LINC01337 Gene

Sources for LINC01337 Gene

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