Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01336 Gene

Subcategory (RNA class) for LINC01336 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01336 Gene

  • Long Intergenic Non-Protein Coding RNA 1336 2 3 5

External Ids for LINC01336 Gene

Summaries for LINC01336 Gene

GeneCards Summary for LINC01336 Gene

LINC01336 (Long Intergenic Non-Protein Coding RNA 1336) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01336 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01336 Gene

Genomics for LINC01336 Gene

GeneHancer (GH) Regulatory Elements for LINC01336 Gene

Promoters and enhancers for LINC01336 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I075049 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 550.8 -0.6 -631 7.1 ARID4B ZNF2 ZNF48 YY1 GLIS2 ZNF143 DEK SP3 RXRA MIER2 LINC01336 GCNT4 ENSG00000272040 ANKRD31 RPS26P26 GC05M075044 PIR55798
GH05I075048 Enhancer 0.5 Ensembl 0.8 +4.2 4157 0.7 POLR2A NR2F1 IKZF1 JUNB BATF IKZF2 RUNX3 GC05M075044 GCNT4 LINC01336 GC05M075033
GH05I075057 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 -6.6 -6574 4.6 ZNF664 GATA3 FOXA2 SP7 GCNT4 ANKRD31 ANKDD1B FAM169A LINC01336 PIR55798
GH05I075095 Enhancer 0.7 ENCODE 0.3 -42.7 -42688 0.2 SOX13 PKNOX1 JUN MAX ZNF384 CEBPG RAD21 RCOR1 FOS GATAD2A PIR55798 LINC01336 ANKRD31
GH05I075062 Enhancer 0.5 dbSUPER 0.4 -9.9 -9934 1.5 RXRA NR2C1 NR2F2 NR2C2 GCNT4 LINC01336 PIR55798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01336 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01336 Gene

Genomic Locations for LINC01336 Gene
chr5:75,047,719-75,052,843
(GRCh38/hg38)
Size:
5,125 bases
Orientation:
Minus strand
chr5:74,343,544-74,348,668
(GRCh37/hg19)

Genomic View for LINC01336 Gene

Genes around LINC01336 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01336 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01336 Gene

Proteins for LINC01336 Gene

Post-translational modifications for LINC01336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01336 Gene

Domains & Families for LINC01336 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01336 Gene

Function for LINC01336 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01336 Gene

Localization for LINC01336 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01336 Gene

Pathways & Interactions for LINC01336 Gene

SuperPathways for LINC01336 Gene

No Data Available

Interacting Proteins for LINC01336 Gene

Gene Ontology (GO) - Biological Process for LINC01336 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01336 Gene

Drugs & Compounds for LINC01336 Gene

No Compound Related Data Available

Transcripts for LINC01336 Gene

mRNA/cDNA for LINC01336 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01336 Gene

No ASD Table

Relevant External Links for LINC01336 Gene

GeneLoc Exon Structure for
LINC01336
ECgene alternative splicing isoforms for
LINC01336

Expression for LINC01336 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01336 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01336 Gene:

LINC01336
genes like me logo Genes that share expression patterns with LINC01336: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01336 Gene

Orthologs for LINC01336 Gene

Evolution for LINC01336 Gene

ENSEMBL:
Gene Tree for LINC01336 (if available)
TreeFam:
Gene Tree for LINC01336 (if available)

No data available for Orthologs for LINC01336 Gene

Paralogs for LINC01336 Gene

No data available for Paralogs for LINC01336 Gene

Variants for LINC01336 Gene

Sequence variations from dbSNP and Humsavar for LINC01336 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000389036 -- 75,052,523(-) C/T non_coding_transcript_variant
rs1000864440 -- 75,048,487(-) C/T intron_variant
rs1000942915 -- 75,050,645(-) C/T intron_variant
rs1002162486 -- 75,051,177(-) C/G/T intron_variant
rs1002798005 -- 75,047,701(-) T/C/G downstream_transcript_variant

Additional Variant Information for LINC01336 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01336

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01336 Gene

Disorders for LINC01336 Gene

Additional Disease Information for LINC01336

No disorders were found for LINC01336 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01336 Gene

Publications for LINC01336 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Identification and initial characterization of 5000 expressed sequenced tags (ESTs) each from adult human normal and osteoarthritic cartilage cDNA libraries. (PMID: 11597177) Kumar S … Lark MW (Osteoarthritis and cartilage 2001) 3 58

Products for LINC01336 Gene

Sources for LINC01336 Gene

Content
Loading form....