Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01335 Gene

Subcategory (RNA class) for LINC01335 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01335 Gene

  • Long Intergenic Non-Protein Coding RNA 1335 2 3 5
  • CTD-2275D24.4 3

External Ids for LINC01335 Gene

Summaries for LINC01335 Gene

GeneCards Summary for LINC01335 Gene

LINC01335 (Long Intergenic Non-Protein Coding RNA 1335) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01335 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01335 Gene

Genomics for LINC01335 Gene

GeneHancer (GH) Regulatory Elements for LINC01335 Gene

Promoters and enhancers for LINC01335 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I074314 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -7.8 -7849 3 PKNOX1 CLOCK SREBF2 NEUROD1 MZF1 SIN3A BMI1 RAD21 HSF1 FOS RN7SL814P UTP15 LINC01333 ENSG00000272525 LINC01157 LINC01335
GH05I074294 Enhancer 0.9 Ensembl ENCODE 0.4 +13.8 13824 0.2 HDGF MEIS2 SMAD1 TAL1 EBF1 BATF IRF4 NFATC1 ATF7 ETV6 LINC01335 LINC01157 LINC02122
GH05I074239 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +66.7 66727 3.3 HDGF NEUROD1 CTBP1 GATA3 RCOR1 FOS HES1 SMARCE1 ELF1 MNT UTP15 LINC01335 LINC02122
GH05I074250 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +57.0 56970 2.3 MEIS2 PKNOX1 ETV1 ZSCAN4 CEBPG ZFHX2 CTBP1 RBAK EGR1 ZBTB48 ANKRA2 UTP15 BTF3 LINC01335 LINC02122
GH05I074256 Enhancer 1 Ensembl ENCODE 0.2 +50.4 50446 2 HDAC1 ATF1 ETV1 TEAD4 TAL1 CEBPG ZIC2 ZNF335 ZNF664 TCF12 LINC01335 LINC01157 LINC02122
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01335 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01335 Gene

Genomic Locations for LINC01335 Gene
chr5:74,306,410-74,308,325
(GRCh38/hg38)
Size:
1,916 bases
Orientation:
Minus strand
chr5:73,602,235-73,604,150
(GRCh37/hg19)

Genomic View for LINC01335 Gene

Genes around LINC01335 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01335 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01335 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01335 Gene

Proteins for LINC01335 Gene

Post-translational modifications for LINC01335 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01335 Gene

Domains & Families for LINC01335 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01335 Gene

Function for LINC01335 Gene

Phenotypes From GWAS Catalog for LINC01335 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01335 Gene

Localization for LINC01335 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01335 Gene

Pathways & Interactions for LINC01335 Gene

SuperPathways for LINC01335 Gene

No Data Available

Interacting Proteins for LINC01335 Gene

Gene Ontology (GO) - Biological Process for LINC01335 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01335 Gene

Drugs & Compounds for LINC01335 Gene

No Compound Related Data Available

Transcripts for LINC01335 Gene

mRNA/cDNA for LINC01335 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01335 Gene

No ASD Table

Relevant External Links for LINC01335 Gene

GeneLoc Exon Structure for
LINC01335
ECgene alternative splicing isoforms for
LINC01335

Expression for LINC01335 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01335 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01335 Gene:

LINC01335
genes like me logo Genes that share expression patterns with LINC01335: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01335 Gene

Orthologs for LINC01335 Gene

Evolution for LINC01335 Gene

ENSEMBL:
Gene Tree for LINC01335 (if available)
TreeFam:
Gene Tree for LINC01335 (if available)

No data available for Orthologs for LINC01335 Gene

Paralogs for LINC01335 Gene

No data available for Paralogs for LINC01335 Gene

Variants for LINC01335 Gene

Sequence variations from dbSNP and Humsavar for LINC01335 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000004653 -- 74,309,901(-) A/T upstream_transcript_variant
rs1000337919 -- 74,307,031(-) C/T intron_variant
rs1000772616 -- 74,307,377(-) T/C intron_variant
rs1000827825 -- 74,307,034(-) T/C intron_variant
rs1001204480 -- 74,307,456(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01335 Gene

Variant ID Type Subtype PubMed ID
nsv509971 OTHER sequence alteration 20534489
nsv830350 CNV gain 17160897

Additional Variant Information for LINC01335 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01335

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01335 Gene

Disorders for LINC01335 Gene

Additional Disease Information for LINC01335

No disorders were found for LINC01335 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01335 Gene

Publications for LINC01335 Gene

No publications were found for LINC01335 Gene.

Products for LINC01335 Gene

Sources for LINC01335 Gene

Content
Loading form....