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Aliases for LINC01333 Gene

Subcategory (RNA class) for LINC01333 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01333 Gene

  • Long Intergenic Non-Protein Coding RNA 1333 2 3 5
  • CTD-2275D24.2 3

External Ids for LINC01333 Gene

Summaries for LINC01333 Gene

GeneCards Summary for LINC01333 Gene

LINC01333 (Long Intergenic Non-Protein Coding RNA 1333) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01333 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01333 Gene

Genomics for LINC01333 Gene

GeneHancer (GH) Regulatory Elements for LINC01333 Gene

Promoters and enhancers for LINC01333 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I074326 Enhancer 1.2 Ensembl ENCODE 8.4 +5.1 5136 2.5 ATF1 PKNOX1 SMAD1 FEZF1 ZNF2 ZNF207 ATF7 FOS RUNX3 JUNB ANKRA2 LINC01333 ENSG00000251041 LINC01332
GH05I074314 Enhancer 1.3 FANTOM5 Ensembl ENCODE 7.4 -6.3 -6312 3 PKNOX1 CLOCK SREBF2 NEUROD1 MZF1 SIN3A BMI1 RAD21 HSF1 FOS RN7SL814P UTP15 LINC01333 ENSG00000272525 LINC01157 LINC01335
GH05I074404 Enhancer 1.3 Ensembl ENCODE dbSUPER 6.1 +85.0 85023 5.7 HDAC1 ELF3 PKNOX1 FOXA2 MLX ARID4B ZBTB40 RAD21 RARA ZNF766 LINC01333 BTF3 ENC1 GC05M074433 LINC01332 LINC01331
GH05I074390 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.2 +71.9 71903 6.8 ZNF133 FEZF1 ZNF2 RUNX3 RXRA NFYC TSHZ1 REST ZNF518A GLIS1 BTF3 LINC01333 GC05M074433 LINC01332 LINC01331
GH05I074412 Enhancer 1.1 ENCODE dbSUPER 6.1 +93.4 93400 6.1 HDAC1 ELF3 PKNOX1 FOXA2 ZFP64 ARID4B RAD21 RARA YY1 ZNF335 LINC01333 BTF3 GC05M074433 LINC01332 LINC01331
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01333 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01333 Gene

Genomic Locations for LINC01333 Gene
chr5:74,322,486-74,328,357
(GRCh38/hg38)
Size:
5,872 bases
Orientation:
Plus strand
chr5:73,618,311-73,624,122
(GRCh37/hg19)

Genomic View for LINC01333 Gene

Genes around LINC01333 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01333 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01333 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01333 Gene

Proteins for LINC01333 Gene

Post-translational modifications for LINC01333 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01333 Gene

Domains & Families for LINC01333 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01333 Gene

Function for LINC01333 Gene

Phenotypes From GWAS Catalog for LINC01333 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01333 Gene

Localization for LINC01333 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01333 Gene

Pathways & Interactions for LINC01333 Gene

SuperPathways for LINC01333 Gene

No Data Available

Interacting Proteins for LINC01333 Gene

Gene Ontology (GO) - Biological Process for LINC01333 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01333 Gene

Drugs & Compounds for LINC01333 Gene

No Compound Related Data Available

Transcripts for LINC01333 Gene

mRNA/cDNA for LINC01333 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01333 Gene

No ASD Table

Relevant External Links for LINC01333 Gene

GeneLoc Exon Structure for
LINC01333
ECgene alternative splicing isoforms for
LINC01333

Expression for LINC01333 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01333 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01333 Gene:

LINC01333
genes like me logo Genes that share expression patterns with LINC01333: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01333 Gene

Orthologs for LINC01333 Gene

Evolution for LINC01333 Gene

ENSEMBL:
Gene Tree for LINC01333 (if available)
TreeFam:
Gene Tree for LINC01333 (if available)

No data available for Orthologs for LINC01333 Gene

Paralogs for LINC01333 Gene

No data available for Paralogs for LINC01333 Gene

Variants for LINC01333 Gene

Sequence variations from dbSNP and Humsavar for LINC01333 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000004328 -- 74,325,091(+) A/T intron_variant
rs1000573610 -- 74,325,698(+) C/T intron_variant
rs1000648475 -- 74,323,727(+) T/G intron_variant
rs1001012949 -- 74,323,905(+) G/C intron_variant
rs1001211078 -- 74,323,239(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01333 Gene

Variant ID Type Subtype PubMed ID
nsv830350 CNV gain 17160897

Additional Variant Information for LINC01333 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01333

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01333 Gene

Disorders for LINC01333 Gene

Additional Disease Information for LINC01333

No disorders were found for LINC01333 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01333 Gene

Publications for LINC01333 Gene

No publications were found for LINC01333 Gene.

Products for LINC01333 Gene

Sources for LINC01333 Gene

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