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Aliases for LINC01331 Gene

Subcategory (RNA class) for LINC01331 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01331 Gene

  • Long Intergenic Non-Protein Coding RNA 1331 2 3 5

External Ids for LINC01331 Gene

Summaries for LINC01331 Gene

GeneCards Summary for LINC01331 Gene

LINC01331 (Long Intergenic Non-Protein Coding RNA 1331) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01331 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01331 Gene

Genomics for LINC01331 Gene

GeneHancer (GH) Regulatory Elements for LINC01331 Gene

Promoters and enhancers for LINC01331 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I074537 Enhancer 1.1 Ensembl ENCODE 550.8 -1.3 -1323 1.5 FOXA2 ARID4B ZNF48 YY1 SLC30A9 ATF7 RXRA MIER2 REST PPARG LINC01331 ENC1 ANKRA2 HEXB
GH05I074542 Enhancer 1.1 Ensembl ENCODE 0.4 -6.7 -6707 2.9 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 ZNF213 KLF7 FOS ZNF263 SP3 ENC1 ANKRA2 LINC01331 HEXB
GH05I074624 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -92.1 -92120 10.1 HDGF FOXA2 SMAD1 ARNT NEUROD1 SIN3A FEZF1 IRF4 ZNF766 ZNF213 ENC1 ENSG00000272040 RPS26P26 FAM169A HEXB LINC01331
GH05I074499 Enhancer 1.1 FANTOM5 ENCODE 0.3 +35.7 35688 4.5 ELF3 FOXA2 MLX ARID4B THRB RAD21 RARA YY1 CREM THAP11 ENC1 LINC01331 GC05P074447
GH05I074575 Enhancer 1 Ensembl ENCODE 0.3 -39.5 -39542 2.6 FOXA2 INSM2 SIN3A BATF IRF4 RAD21 FOS BCLAF1 IKZF2 RUNX3 ENC1 LINC01331 HEXB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01331 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01331 Gene

Genomic Locations for LINC01331 Gene
chr5:74,369,376-74,536,976
(GRCh38/hg38)
Size:
167,601 bases
Orientation:
Minus strand
chr5:73,665,201-73,832,801
(GRCh37/hg19)

Genomic View for LINC01331 Gene

Genes around LINC01331 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01331 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01331 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01331 Gene

Proteins for LINC01331 Gene

Post-translational modifications for LINC01331 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01331 Gene

Domains & Families for LINC01331 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01331 Gene

Function for LINC01331 Gene

Phenotypes From GWAS Catalog for LINC01331 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01331 Gene

Localization for LINC01331 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01331 Gene

Pathways & Interactions for LINC01331 Gene

SuperPathways for LINC01331 Gene

No Data Available

Interacting Proteins for LINC01331 Gene

Gene Ontology (GO) - Biological Process for LINC01331 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01331 Gene

Drugs & Compounds for LINC01331 Gene

No Compound Related Data Available

Transcripts for LINC01331 Gene

mRNA/cDNA for LINC01331 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01331 Gene

No ASD Table

Relevant External Links for LINC01331 Gene

GeneLoc Exon Structure for
LINC01331
ECgene alternative splicing isoforms for
LINC01331

Expression for LINC01331 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01331 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01331 Gene:

LINC01331
genes like me logo Genes that share expression patterns with LINC01331: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01331 Gene

Orthologs for LINC01331 Gene

Evolution for LINC01331 Gene

ENSEMBL:
Gene Tree for LINC01331 (if available)
TreeFam:
Gene Tree for LINC01331 (if available)

No data available for Orthologs for LINC01331 Gene

Paralogs for LINC01331 Gene

No data available for Paralogs for LINC01331 Gene

Variants for LINC01331 Gene

Sequence variations from dbSNP and Humsavar for LINC01331 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000008791 -- 74,516,470(-) T/C intron_variant
rs1000024248 -- 74,506,932(-) G/A intron_variant
rs1000036027 -- 74,511,894(-) A/G intron_variant
rs1000040076 -- 74,482,862(-) G/A intron_variant
rs1000042909 -- 74,406,888(-) T/C intron_variant

Additional Variant Information for LINC01331 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01331

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01331 Gene

Disorders for LINC01331 Gene

Additional Disease Information for LINC01331

No disorders were found for LINC01331 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01331 Gene

Publications for LINC01331 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01331 Gene

Sources for LINC01331 Gene

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