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Aliases for LINC01322 Gene

Subcategory (RNA class) for LINC01322 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01322 Gene

  • Long Intergenic Non-Protein Coding RNA 1322 2 3 5

External Ids for LINC01322 Gene

Summaries for LINC01322 Gene

GeneCards Summary for LINC01322 Gene

LINC01322 (Long Intergenic Non-Protein Coding RNA 1322) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01322 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01322 Gene

Genomics for LINC01322 Gene

GeneHancer (GH) Regulatory Elements for LINC01322 Gene

Promoters and enhancers for LINC01322 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J165207 Promoter 1 Ensembl 650.7 +0.2 240 0.4 CTCF FOXA2 TAF1 ZNF48 RAD21 YY1 E2F1 ZNF614 ZNF143 SMC3 LINC01322 GC03P165675
GH03J165458 Enhancer 0.5 ENCODE 0.1 +253.7 253718 5 SP1 SIN3A ZSCAN29 FOSL2 MAFK GC03P165675 LINC01322
GH03J165569 Enhancer 0.4 FANTOM5 0.1 +362.3 362293 0.1 EBF1 MEF2B GC03P165675 LINC01322
GH03J165498 Enhancer 0.3 FANTOM5 0.1 +291.4 291410 0.4 ZNF512 GC03P165675 LINC01322
GH03J165384 Enhancer 0.2 FANTOM5 0.1 +177.4 177371 0.2 SLITRK3 LINC01322 GC03P165675
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01322 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01322 Gene

Genomic Locations for LINC01322 Gene
chr3:165,206,960-165,655,423
(GRCh38/hg38)
Size:
448,464 bases
Orientation:
Plus strand
chr3:164,924,748-165,373,211
(GRCh37/hg19)
Size:
448,464 bases
Orientation:
Plus strand

Genomic View for LINC01322 Gene

Genes around LINC01322 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01322 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01322 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01322 Gene

Proteins for LINC01322 Gene

Post-translational modifications for LINC01322 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01322 Gene

Domains & Families for LINC01322 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01322 Gene

Function for LINC01322 Gene

Phenotypes From GWAS Catalog for LINC01322 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01322 Gene

Localization for LINC01322 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01322 Gene

Pathways & Interactions for LINC01322 Gene

SuperPathways for LINC01322 Gene

No Data Available

Interacting Proteins for LINC01322 Gene

Gene Ontology (GO) - Biological Process for LINC01322 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01322 Gene

Drugs & Compounds for LINC01322 Gene

No Compound Related Data Available

Transcripts for LINC01322 Gene

mRNA/cDNA for LINC01322 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01322 Gene

No ASD Table

Relevant External Links for LINC01322 Gene

GeneLoc Exon Structure for
LINC01322
ECgene alternative splicing isoforms for
LINC01322

Expression for LINC01322 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01322 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01322 Gene:

LINC01322
genes like me logo Genes that share expression patterns with LINC01322: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01322 Gene

Orthologs for LINC01322 Gene

Evolution for LINC01322 Gene

ENSEMBL:
Gene Tree for LINC01322 (if available)
TreeFam:
Gene Tree for LINC01322 (if available)

No data available for Orthologs for LINC01322 Gene

Paralogs for LINC01322 Gene

No data available for Paralogs for LINC01322 Gene

Variants for LINC01322 Gene

Sequence variations from dbSNP and Humsavar for LINC01322 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000000280 -- 165,285,968(+) C/T intron_variant
rs1000009465 -- 165,309,503(+) T/C intron_variant
rs1000010246 -- 165,387,768(+) G/A intron_variant
rs1000019682 -- 165,366,304(+) T/G intron_variant
rs1000028511 -- 165,223,052(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01322 Gene

Variant ID Type Subtype PubMed ID
nsv818185 CNV loss 17921354
nsv592472 CNV gain 21841781
nsv592471 CNV loss 21841781
nsv592462 CNV gain 21841781
nsv592446 CNV loss 21841781
nsv515674 CNV loss 19592680
nsv514185 CNV loss 21397061
nsv460972 CNV loss 19166990
nsv460971 CNV gain 19166990
nsv441848 CNV loss 18776908
nsv437896 CNV loss 16468122
nsv428426 CNV loss 18775914
nsv1142589 CNV deletion 24896259
nsv1112835 CNV deletion 24896259
nsv1078954 CNV insertion 25765185
nsv1074107 CNV deletion 25765185
nsv1073693 CNV deletion 25765185
nsv10353 CNV gain 18304495
nsv10352 CNV loss 18304495
nsv1011190 CNV loss 25217958
nsv1001930 CNV gain 25217958
esv3893806 CNV gain 25118596
esv3598503 CNV loss 21293372
esv3598500 CNV loss 21293372
esv3598499 CNV loss 21293372
esv3598498 CNV loss 21293372
esv3598497 CNV loss 21293372
esv3598496 CNV gain 21293372
esv3562863 CNV deletion 23714750
esv3562862 CNV deletion 23714750
esv3303772 CNV mobile element insertion 20981092
esv2760778 CNV loss 21179565
esv2759200 CNV loss 17122850
esv2743360 CNV deletion 23290073
esv2726160 CNV deletion 23290073
esv2726159 CNV deletion 23290073
esv2673771 CNV deletion 23128226
esv2670809 CNV deletion 23128226
esv2656485 CNV deletion 23128226
esv2421874 CNV deletion 20811451
esv22741 CNV loss 19812545
esv1928379 CNV deletion 18987734
esv1575834 CNV deletion 17803354
dgv951e214 CNV loss 21293372
dgv8721n54 CNV loss 21841781
dgv8720n54 CNV loss 21841781
dgv8719n54 CNV loss 21841781
dgv8718n54 CNV loss 21841781
dgv4972n100 CNV loss 25217958
dgv4971n100 CNV loss 25217958
dgv1426e212 CNV loss 25503493
dgv110e203 CNV loss 21179565

Additional Variant Information for LINC01322 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01322

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01322 Gene

Disorders for LINC01322 Gene

Additional Disease Information for LINC01322

No disorders were found for LINC01322 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01322 Gene

Publications for LINC01322 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01322 Gene

Sources for LINC01322 Gene

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