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Aliases for LINC01317 Gene

Subcategory (RNA class) for LINC01317 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01317 Gene

  • Long Intergenic Non-Protein Coding RNA 1317 2 3 5

External Ids for LINC01317 Gene

Summaries for LINC01317 Gene

GeneCards Summary for LINC01317 Gene

LINC01317 (Long Intergenic Non-Protein Coding RNA 1317) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01317 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01317 Gene

Genomics for LINC01317 Gene

GeneHancer (GH) Regulatory Elements for LINC01317 Gene

Promoters and enhancers for LINC01317 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J034103 Enhancer 0.8 Ensembl ENCODE 0.1 +398.3 398263 2.8 JUN MAFG ATF2 MAFF JUND FOS MAFK PRDM1 FAM98A GC02P034077 LOC105374457 LINC01317
GH02J033848 Enhancer 0.2 ENCODE 0.1 +141.9 141877 1.2 GC02M033845 GC02P033914 LINC01317
GH02J034102 Enhancer 0.2 ENCODE 0.1 +395.6 395633 0.1 GC02P034077 LOC105374457 LINC01317
GH02J033990 Enhancer 0.2 FANTOM5 0.1 +283.7 283661 0 GC02P033914 LOC105374456 LINC01317
GH02J034177 Enhancer 0.2 FANTOM5 0 +470.9 470917 0.2 GC02P034077 LOC105374457 LINC01317
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01317 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01317 Gene

Genomic Locations for LINC01317 Gene
590,868 bases
Plus strand
590,868 bases
Plus strand

Genomic View for LINC01317 Gene

Genes around LINC01317 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01317 Gene

Proteins for LINC01317 Gene

Post-translational modifications for LINC01317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01317 Gene

Domains & Families for LINC01317 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01317 Gene

Function for LINC01317 Gene

Phenotypes From GWAS Catalog for LINC01317 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01317 Gene

Localization for LINC01317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01317 Gene

Pathways & Interactions for LINC01317 Gene

SuperPathways for LINC01317 Gene

No Data Available

Interacting Proteins for LINC01317 Gene

Gene Ontology (GO) - Biological Process for LINC01317 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01317 Gene

Drugs & Compounds for LINC01317 Gene

No Compound Related Data Available

Transcripts for LINC01317 Gene

mRNA/cDNA for LINC01317 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01317 Gene

No ASD Table

Relevant External Links for LINC01317 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01317 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01317 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01317 Gene:

genes like me logo Genes that share expression patterns with LINC01317: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01317 Gene

Orthologs for LINC01317 Gene

Evolution for LINC01317 Gene

Gene Tree for LINC01317 (if available)
Gene Tree for LINC01317 (if available)

No data available for Orthologs for LINC01317 Gene

Paralogs for LINC01317 Gene

No data available for Paralogs for LINC01317 Gene

Variants for LINC01317 Gene

Sequence variations from dbSNP and Humsavar for LINC01317 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000000730 -- 33,923,185(+) C/T intron_variant
rs1000019399 -- 33,968,168(+) C/T intron_variant
rs1000033111 -- 33,923,392(+) G/A intron_variant
rs1000033296 -- 34,122,034(+) C/G intron_variant
rs1000039464 -- 33,751,070(+) C/G intron_variant

Additional Variant Information for LINC01317 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01317 Gene

Disorders for LINC01317 Gene

Additional Disease Information for LINC01317

No disorders were found for LINC01317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01317 Gene

Publications for LINC01317 Gene

  1. Non-coding RNAs and gastric cancer. (PMID: 24833871) Li PF … Guo JM (World journal of gastroenterology 2014) 2 3 58

Products for LINC01317 Gene

Sources for LINC01317 Gene

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