Aliases for LINC01315 Gene

Subcategory (RNA class) for LINC01315 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01315 Gene

  • Long Intergenic Non-Protein Coding RNA 1315 2 3 5
  • LINC01315 2 5 165
  • Lnc-C22orf32-1 2 3
  • C22orf32-1 2 3
  • NONHSAG034053.2 91
  • HSALNG0135702 164

External Ids for LINC01315 Gene

Previous GeneCards Identifiers for LINC01315 Gene

  • GC22M042364
  • GC22M042982
  • GC22M044577

Summaries for LINC01315 Gene

GeneCards Summary for LINC01315 Gene

LINC01315 (Long Intergenic Non-Protein Coding RNA 1315) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01315 include Nasopharyngeal Carcinoma.

Additional gene information for LINC01315 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01315 Gene

Genomics for LINC01315 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01315 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01315 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01315 Gene

Genomic Locations for LINC01315 Gene
chr22:42,362,309-42,369,284
(GRCh38/hg38)
Size:
6,976 bases
Orientation:
Minus strand

Genomic View for LINC01315 Gene

Genes around LINC01315 on UCSC Golden Path with GeneCards custom track
LINC01315 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01315 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01315 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01315 Gene

Proteins for LINC01315 Gene

Post-translational modifications for LINC01315 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01315 Gene

Domains & Families for LINC01315 Gene

Gene Families for LINC01315 Gene

genes like me logo Genes that share domains with LINC01315: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01315 Gene

Function for LINC01315 Gene

Phenotypes From GWAS Catalog for LINC01315 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01315 Gene

Localization for LINC01315 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01315 Gene

Pathways & Interactions for LINC01315 Gene

PathCards logo

SuperPathways for LINC01315 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01315 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01315 Gene

Drugs & Compounds for LINC01315 Gene

No Compound Related Data Available

Transcripts for LINC01315 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01315 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D7CC1_9606 lncRNA 1142 3

Ensembl: ENST00000424852 (view in UCSC) ,

LNCipedia: LINC01315:2,

NONCODE: NONHSAT087049.2,

URS00003F6FC2_9606 lncRNA 475 3

Ensembl: ENST00000412060 (view in UCSC) ,

LNCipedia: LINC01315:3,

NONCODE: NONHSAT087048.2,

URS000075EAC2_9606 lncRNA 1239 2

HGNC: 50513,

RefSeq: NR_120595,

URS000026D5BC_9606 lncRNA 780 2

Ensembl: ENST00000432473 (view in UCSC) ,

LNCipedia: LINC01315:8,

URS0000EF11C3_9606 lncRNA 1277 1

Ensembl: ENST00000669665 (view in UCSC) ,

LINC01315 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01315 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01315 Gene

No ASD Table

Relevant External Links for LINC01315 Gene

GeneLoc Exon Structure for
LINC01315

Expression for LINC01315 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01315 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01315

genes like me logo Genes that share expression patterns with LINC01315: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01315 Gene

Orthologs for LINC01315 Gene

Evolution for LINC01315 Gene

ENSEMBL:
Gene Tree for LINC01315 (if available)
TreeFam:
Gene Tree for LINC01315 (if available)

No data available for Orthologs for LINC01315 Gene

Paralogs for LINC01315 Gene

No data available for Paralogs for LINC01315 Gene

Variants for LINC01315 Gene

Additional dbSNP identifiers (rs#s) for LINC01315 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01315 Gene

Variant ID Type Subtype PubMed ID
nsv589065 CNV gain 21841781
nsv829244 CNV gain 20364138
nsv834211 CNV loss 17160897

Additional Variant Information for LINC01315 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01315

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01315 Gene

Disorders for LINC01315 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01315 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
nasopharyngeal carcinoma
  • npc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01315: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01315 Gene

Publications for LINC01315 Gene

  1. lncRNA C22orf32-1 contributes to the tumorigenesis of nasopharyngeal carcinoma. (PMID: 28588717) Nie GH … Zhang W (Oncology letters 2017) 2 3

Products for LINC01315 Gene

Sources for LINC01315 Gene