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Aliases for LINC01315 Gene

Subcategory (RNA class) for LINC01315 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01315 Gene

  • Long Intergenic Non-Protein Coding RNA 1315 2 3 5
  • Lnc-C22orf32-1 3
  • C22orf32-1 3

External Ids for LINC01315 Gene

Summaries for LINC01315 Gene

GeneCards Summary for LINC01315 Gene

LINC01315 (Long Intergenic Non-Protein Coding RNA 1315) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01315 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01315 Gene

Genomics for LINC01315 Gene

GeneHancer (GH) Regulatory Elements for LINC01315 Gene

Promoters and enhancers for LINC01315 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I042368 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 561 +0.1 117 1.6 HDGF PKNOX1 SMAD1 ZNF133 ARID4B ZNF2 ZNF121 GLIS2 ATF7 KLF7 LINC01315 PHF5A XRCC6 RPL5P34 RN7SKP80 RRP7BP CYP2D8P NFAM1 POLDIP3 SMDT1
GH22I042367 Enhancer 0.7 Ensembl dbSUPER 550.8 +1.5 1535 0.2 GLIS2 ZBTB11 ZNF341 WT1 ZKSCAN1 LINC01315 NFAM1 GC22M042499
GH22I042364 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +3.8 3848 1.7 KLF17 FEZF1 ZNF335 GLIS2 ZNF398 ZEB2 SP1 PRDM6 ZSCAN16 GLIS1 TCF20 LINC01315 WBP2NL NFAM1 GC22M042499
GH22I042374 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -6.7 -6705 2.9 HDGF ELF3 KLF17 SIN3A FEZF1 RAD21 ZNF335 ZNF143 RCOR1 DEK GC22P042375 NFAM1 LINC01315 ARFGAP3 CYP2D7 CYP2D6 ENSG00000232710 SMDT1 NDUFA6 CSDC2
GH22I042343 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 8.3 +25.0 25032 2 BCOR BACH1 ZMYM3 FEZF1 BCL11B E2F1 ZFHX2 POLR2A VEZF1 ZNF143 TCF20 NFAM1 LINC01315 GC22P042359
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01315 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01315 Gene

Genomic Locations for LINC01315 Gene
chr22:42,364,400-42,369,236
(GRCh38/hg38)
Size:
4,837 bases
Orientation:
Minus strand
chr22:42,760,406-42,765,242
(GRCh37/hg19)

Genomic View for LINC01315 Gene

Genes around LINC01315 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01315 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01315 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01315 Gene

Proteins for LINC01315 Gene

Post-translational modifications for LINC01315 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01315 Gene

Domains & Families for LINC01315 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01315 Gene

Function for LINC01315 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01315 Gene

Localization for LINC01315 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01315 Gene

Pathways & Interactions for LINC01315 Gene

SuperPathways for LINC01315 Gene

No Data Available

Interacting Proteins for LINC01315 Gene

Gene Ontology (GO) - Biological Process for LINC01315 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01315 Gene

Drugs & Compounds for LINC01315 Gene

No Compound Related Data Available

Transcripts for LINC01315 Gene

mRNA/cDNA for LINC01315 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01315 Gene

No ASD Table

Relevant External Links for LINC01315 Gene

GeneLoc Exon Structure for
LINC01315
ECgene alternative splicing isoforms for
LINC01315

Expression for LINC01315 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01315 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01315 Gene:

LINC01315
genes like me logo Genes that share expression patterns with LINC01315: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01315 Gene

Orthologs for LINC01315 Gene

Evolution for LINC01315 Gene

ENSEMBL:
Gene Tree for LINC01315 (if available)
TreeFam:
Gene Tree for LINC01315 (if available)

No data available for Orthologs for LINC01315 Gene

Paralogs for LINC01315 Gene

No data available for Paralogs for LINC01315 Gene

Variants for LINC01315 Gene

Sequence variations from dbSNP and Humsavar for LINC01315 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000283466 -- 42,368,755(-) G/C/T intron_variant, non_coding_transcript_variant
rs1000409812 -- 42,367,044(-) C/T intron_variant
rs1000418966 -- 42,369,063(-) C/CAGC non_coding_transcript_variant
rs1000759553 -- 42,367,355(-) G/A intron_variant
rs1001283163 -- 42,367,407(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01315 Gene

Variant ID Type Subtype PubMed ID
nsv589065 CNV gain 21841781
nsv829244 CNV gain 20364138
nsv834211 CNV loss 17160897

Additional Variant Information for LINC01315 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01315

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01315 Gene

Disorders for LINC01315 Gene

Additional Disease Information for LINC01315

No disorders were found for LINC01315 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01315 Gene

Publications for LINC01315 Gene

  1. lncRNA C22orf32-1 contributes to the tumorigenesis of nasopharyngeal carcinoma. (PMID: 28588717) Nie GH … Zhang W (Oncology letters 2017) 2 3 58

Products for LINC01315 Gene

Sources for LINC01315 Gene

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