Aliases for LINC01312 Gene

Subcategory (RNA class) for LINC01312 Gene


Number of RNA Genes sources:

3 / 14

Aliases for LINC01312 Gene

  • Long Intergenic Non-Protein Coding RNA 1312 2 3 5
  • LINC01312 2 168
  • HSALNG0053588 167
  • NONHSAG044880 92

External Ids for LINC01312 Gene

Summaries for LINC01312 Gene

GeneCards Summary for LINC01312 Gene

LINC01312 (Long Intergenic Non-Protein Coding RNA 1312) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01312 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01312 Gene

Genomics for LINC01312 Gene

GeneHancer (GH) Regulatory Elements for LINC01312 Gene

Promoters and enhancers for LINC01312 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J133837 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.4 +16.9 16875 0.8 ZNF217 CTCF ZIC2 ZBTB10 ZBTB26 REST KLF7 CTBP1 TRIM22 SMC3 TCF21 LINC01312 lnc-TCF21-2 TARID
GH06J133815 Enhancer 0.8 Ensembl ENCODE 0.4 -5.8 -5799 0.7 FOS FOSL2 CEBPB NR3C1 JUND ZFHX2 BATF EP300 ZNF398 EGR2 LINC01312 TARID FTH1P26 lnc-SLC2A12-10
GH06J133818 Enhancer 0.3 Ensembl 0.7 -4.1 -4146 0.4 CTCF LINC01312 TARID FTH1P26 lnc-SLC2A12-10
GH06J133740 Enhancer 1 Ensembl ENCODE 0.2 -79.9 -79923 1.7 ZIC2 TRIM28 EP300 CTBP1 ZNF341 OSR2 NCOR1 WT1 TCF7L2 REST lnc-SLC2A12-10 FTH1P26 LINC01312 TARID
GH06J133833 Enhancer 0.4 Ensembl 0.4 +13.0 12953 0.6 NFIC FOXP2 SMARCA4 YY2 LINC01312 lnc-TCF21-2 TARID
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01312 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01312 Gene

Genomic Locations for LINC01312 Gene
56,050 bases
Plus strand
32,846 bases
Plus strand

Genomic View for LINC01312 Gene

Genes around LINC01312 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01312 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01312 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01312 Gene

Proteins for LINC01312 Gene

Post-translational modifications for LINC01312 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01312 Gene

Domains & Families for LINC01312 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01312 Gene

Function for LINC01312 Gene

Phenotypes From GWAS Catalog for LINC01312 Gene

Phenotypes for LINC01312 Gene

GenomeRNAi human phenotypes for LINC01312:
genes like me logo Genes that share phenotypes with LINC01312: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01312 Gene

Localization for LINC01312 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01312 Gene

Pathways & Interactions for LINC01312 Gene

PathCards logo

SuperPathways for LINC01312 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01312 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01312 Gene

Drugs & Compounds for LINC01312 Gene

No Compound Related Data Available

Transcripts for LINC01312 Gene

mRNA/cDNA for LINC01312 Gene

7 RNACentral transcripts :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01312 Gene

No ASD Table

Relevant External Links for LINC01312 Gene

GeneLoc Exon Structure for

Expression for LINC01312 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01312 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01312

genes like me logo Genes that share expression patterns with LINC01312: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01312 Gene

Orthologs for LINC01312 Gene

Evolution for LINC01312 Gene

Gene Tree for LINC01312 (if available)
Gene Tree for LINC01312 (if available)

No data available for Orthologs for LINC01312 Gene

Paralogs for LINC01312 Gene

No data available for Paralogs for LINC01312 Gene

Variants for LINC01312 Gene

Additional dbSNP identifiers (rs#s) for LINC01312 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01312 Gene

Variant ID Type Subtype PubMed ID
dgv3395n106 CNV deletion 24896259
esv1653143 CNV deletion 17803354
esv2011634 CNV deletion 18987734
esv2732724 CNV deletion 23290073
esv2732725 CNV deletion 23290073
esv2732726 CNV deletion 23290073
esv2732727 CNV deletion 23290073
esv34122 CNV loss 18971310
esv3559636 CNV deletion 23714750
esv994787 CNV deletion 20482838
nsv1074017 CNV deletion 25765185
nsv1150902 CNV deletion 26484159
nsv830812 CNV gain 17160897

Additional Variant Information for LINC01312 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01312 Gene

Disorders for LINC01312 Gene

Additional Disease Information for LINC01312

No disorders were found for LINC01312 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01312 Gene

Publications for LINC01312 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis. (PMID: 22306654) Feenstra B … Melbye M (Nature genetics 2012) 3 54

Products for LINC01312 Gene

Sources for LINC01312 Gene