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Aliases for LINC01312 Gene

Subcategory (RNA class) for LINC01312 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01312 Gene

  • Long Intergenic Non-Protein Coding RNA 1312 2 3 5

External Ids for LINC01312 Gene

Summaries for LINC01312 Gene

GeneCards Summary for LINC01312 Gene

LINC01312 (Long Intergenic Non-Protein Coding RNA 1312) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01312 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01312 Gene

Genomics for LINC01312 Gene

GeneHancer (GH) Regulatory Elements for LINC01312 Gene

Promoters and enhancers for LINC01312 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J133837 Enhancer 1.1 Ensembl ENCODE 0.4 +16.9 16886 0.9 DMAP1 ZNF2 ZNF48 ZNF143 KLF7 ATF7 KLF13 SP3 REST ZNF518A TCF21 LINC01312 TARID
GH06J133815 Enhancer 0.8 Ensembl ENCODE 0.4 -6.0 -6046 0.2 CEBPB ZNF398 KLF14 BATF EP300 ZFHX2 JUND FOS FOSL2 EGR2 LINC01312 TARID FTH1P26
GH06J133778 Enhancer 0.8 Ensembl ENCODE 0.3 -42.5 -42485 0.3 JUN MAX USF2 CEBPB SP1 FOSL1 JUND ATF3 HNF4A PRDM10 LINC01312 FTH1P26 TARID
GH06J133745 Enhancer 0.9 Ensembl ENCODE 0.2 -75.1 -75088 1.5 ELF3 JUN SIN3A ZNF384 TEAD3 FOSL1 E2F1 CTBP1 FOSL2 PRDM10 FTH1P26 LINC01312 TARID
GH06J133740 Enhancer 0.8 ENCODE 0.2 -79.9 -79923 1.7 PKNOX1 ZSCAN4 KLF17 MZF1 FEZF1 RAD21 TCF12 ZNF366 ZNF548 EGR2 SNORA33 FTH1P26 LINC01312 TARID
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01312 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01312 Gene

Genomic Locations for LINC01312 Gene
chr6:133,821,147-133,853,992
(GRCh38/hg38)
Size:
32,846 bases
Orientation:
Plus strand
chr6:134,142,285-134,175,130
(GRCh37/hg19)
Size:
32,846 bases
Orientation:
Plus strand

Genomic View for LINC01312 Gene

Genes around LINC01312 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01312 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01312 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01312 Gene

Proteins for LINC01312 Gene

Post-translational modifications for LINC01312 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01312 Gene

Domains & Families for LINC01312 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01312 Gene

Function for LINC01312 Gene

Phenotypes From GWAS Catalog for LINC01312 Gene

Phenotypes for LINC01312 Gene

GenomeRNAi human phenotypes for LINC01312:
genes like me logo Genes that share phenotypes with LINC01312: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01312 Gene

Localization for LINC01312 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01312 Gene

Pathways & Interactions for LINC01312 Gene

SuperPathways for LINC01312 Gene

No Data Available

Interacting Proteins for LINC01312 Gene

Gene Ontology (GO) - Biological Process for LINC01312 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01312 Gene

Drugs & Compounds for LINC01312 Gene

No Compound Related Data Available

Transcripts for LINC01312 Gene

mRNA/cDNA for LINC01312 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01312 Gene

No ASD Table

Relevant External Links for LINC01312 Gene

GeneLoc Exon Structure for
LINC01312
ECgene alternative splicing isoforms for
LINC01312

Expression for LINC01312 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01312 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01312 Gene:

LINC01312
genes like me logo Genes that share expression patterns with LINC01312: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01312 Gene

Orthologs for LINC01312 Gene

Evolution for LINC01312 Gene

ENSEMBL:
Gene Tree for LINC01312 (if available)
TreeFam:
Gene Tree for LINC01312 (if available)

No data available for Orthologs for LINC01312 Gene

Paralogs for LINC01312 Gene

No data available for Paralogs for LINC01312 Gene

Variants for LINC01312 Gene

Sequence variations from dbSNP and Humsavar for LINC01312 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000132316 -- 133,835,798(+) T/C intron_variant
rs1000198657 -- 133,840,232(+) T/C intron_variant
rs1000220822 -- 133,837,865(+) T/C intron_variant
rs1000250633 -- 133,837,596(+) T/C non_coding_transcript_variant
rs1000381887 -- 133,853,308(+) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01312 Gene

Variant ID Type Subtype PubMed ID
nsv830812 CNV gain 17160897
nsv1150902 CNV deletion 26484159
nsv1074017 CNV deletion 25765185
esv994787 CNV deletion 20482838
esv3559636 CNV deletion 23714750
esv34122 CNV loss 18971310
esv2732727 CNV deletion 23290073
esv2732726 CNV deletion 23290073
esv2732725 CNV deletion 23290073
esv2732724 CNV deletion 23290073
esv2011634 CNV deletion 18987734
esv1653143 CNV deletion 17803354
dgv3395n106 CNV deletion 24896259

Additional Variant Information for LINC01312 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01312

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01312 Gene

Disorders for LINC01312 Gene

Additional Disease Information for LINC01312

No disorders were found for LINC01312 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01312 Gene

Publications for LINC01312 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis. (PMID: 22306654) Feenstra B … Melbye M (Nature genetics 2012) 3 58

Products for LINC01312 Gene

Sources for LINC01312 Gene

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