LINC01311 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1311

GC22P019171
GIFtS:
13
See more...

Aliases for LINC01311 Gene

Subcategory (RNA class) for LINC01311 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01311 Gene

  • Long Intergenic Non-Protein Coding RNA 1311 2 3 5
  • LINC01311 2 5 165
  • NONHSAG033266.2 91

External Ids for LINC01311 Gene

Summaries for LINC01311 Gene

GeneCards Summary for LINC01311 Gene

LINC01311 (Long Intergenic Non-Protein Coding RNA 1311) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01311 include T-Cell Immunodeficiency With Thymic Aplasia.

Additional gene information for LINC01311 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01311 Gene

Genomics for LINC01311 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01311 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01311 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01311 Gene

Genomic Locations for LINC01311 Gene
chr22:19,171,395-19,175,403
(GRCh38/hg38)
Size:
4,009 bases
Orientation:
Plus strand
chr22:19,158,908-19,160,352
(GRCh37/hg19)
Size:
1,445 bases
Orientation:
Plus strand

Genomic View for LINC01311 Gene

Genes around LINC01311 on UCSC Golden Path with GeneCards custom track
LINC01311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01311 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01311 Gene

Proteins for LINC01311 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01311 Gene

Domains & Families for LINC01311 Gene

Gene Families for LINC01311 Gene

HGNC:
genes like me logo Genes that share domains with LINC01311: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01311 Gene

Function for LINC01311 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01311 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01311 Gene

Localization for LINC01311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01311 Gene

Pathways & Interactions for LINC01311 Gene

PathCards logo

SuperPathways for LINC01311 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01311 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01311 Gene

Drugs & Compounds for LINC01311 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01311 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01311 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049138A_9606 lncRNA 1445 2

Ensembl: ENST00000565162 (view in UCSC) ,

LNCipedia: LINC01311:2,

URS000075C74D_9606 lncRNA 1127 2

HGNC: 50503,

RefSeq: NR_103767,

URS00008BE017_9606 lncRNA 1438 2

LNCipedia: LINC01311:1,

NONCODE: NONHSAT083392.2,

URS0000D5D9FA_9606 lncRNA 3593 1

LNCipedia: LINC01311:5,

URS00008BE93A_9606 lncRNA 1127 1

LNCipedia: LINC01311:3,

LINC01311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01311 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01311 Gene

No ASD Table

Relevant External Links for LINC01311 Gene

GeneLoc Exon Structure for
LINC01311

Expression for LINC01311 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01311 Gene

mRNA expression in normal human tissues for LINC01311 Gene
mRNA expression by GTEx for LINC01311 Gene
genes like me logo Genes that share expression patterns with LINC01311: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01311 Gene

Orthologs for LINC01311 Gene

Evolution for LINC01311 Gene

ENSEMBL:
Gene Tree for LINC01311 (if available)
TreeFam:
Gene Tree for LINC01311 (if available)

No data available for Orthologs for LINC01311 Gene

Paralogs for LINC01311 Gene

No data available for Paralogs for LINC01311 Gene

Variants for LINC01311 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01311 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01311 Gene

Variant ID Type Subtype PubMed ID
esv3575418 CNV gain 25503493
nsv588213 CNV gain 21841781
nsv588216 CNV gain 21841781
nsv834122 CNV loss 17160897

Additional Variant Information for LINC01311 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01311

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01311 Gene

Disorders for LINC01311 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01311 Gene - From: DISEASES

Disorder Aliases PubMed IDs
t-cell immunodeficiency with thymic aplasia
  • tidta
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01311

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with LINC01311: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01311 Gene

Publications for LINC01311 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3

ExternalLinks

View latest publications for LINC01311 gene in Mastermind

Products for LINC01311 Gene

Sources for LINC01311 Gene