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Aliases for LINC01311 Gene

Subcategory (RNA class) for LINC01311 Gene


Quality Score for this RNA gene is


Aliases for LINC01311 Gene

  • Long Intergenic Non-Protein Coding RNA 1311 2 3 5

External Ids for LINC01311 Gene

ORGUL Members for LINC01311 Gene

Summaries for LINC01311 Gene

GeneCards Summary for LINC01311 Gene

LINC01311 (Long Intergenic Non-Protein Coding RNA 1311) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01311 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01311 Gene

Genomics for LINC01311 Gene

GeneHancer (GH) Regulatory Elements for LINC01311 Gene

Promoters and enhancers for LINC01311 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J019289 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 43.7 +119.8 119782 3.8 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 CLTCL1 LOC105372859 TRMT2A LINC01311 DGCR8 RANBP1 ESS2 SLC25A1 ZDHHC8 GC22M019285
GH22J019429 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 43.4 +260.4 260379 4.7 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 ZNF263 MRPL40 HIRA TRMT2A DGCR8 UFD1 LINC01311 RPL7AP70 ENSG00000273300 RPL8P5 ESS2
GH22J019958 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 43.4 +790.1 790080 6.4 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 COMT GC22M019961 LINC01311 LOC100420177 TRMT2A UFD1 RPL7AP70 KLHL22 ENSG00000273343 ZNF74
GH22J019940 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 34.1 +771.3 771318 4.5 HNRNPUL1 PKNOX1 SMAD1 ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZHX2 COMT TXNRD2 GC22M019943 DGCR8 TRMT2A LINC01311 LOC100420177 MED15 RPL7AP70 RPL8P5
GH22J019718 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 41.4 +547.3 547291 2.3 HDGF PKNOX1 ARNT SIN3A ZNF2 POLR2B ZNF207 ZNF143 ZNF263 SP5 SEPT5-GP1BB LINC01311 DGCR8 TRMT2A RANBP1 ZNF74 MED15 UFD1 ABHD17AP4 KLHL22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01311 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01311 Gene

Genomic Locations for LINC01311 Gene
1,445 bases
Plus strand
1,445 bases
Plus strand

Genomic View for LINC01311 Gene

Genes around LINC01311 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01311 Gene

Proteins for LINC01311 Gene

Post-translational modifications for LINC01311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01311 Gene

Domains & Families for LINC01311 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01311 Gene

Function for LINC01311 Gene

Phenotypes From GWAS Catalog for LINC01311 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01311 Gene

Localization for LINC01311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01311 Gene

Pathways & Interactions for LINC01311 Gene

SuperPathways for LINC01311 Gene

No Data Available

Interacting Proteins for LINC01311 Gene

Gene Ontology (GO) - Biological Process for LINC01311 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01311 Gene

Drugs & Compounds for LINC01311 Gene

No Compound Related Data Available

Transcripts for LINC01311 Gene

mRNA/cDNA for LINC01311 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01311 Gene

No ASD Table

Relevant External Links for LINC01311 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01311 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01311 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01311 Gene:

genes like me logo Genes that share expression patterns with LINC01311: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01311 Gene

Orthologs for LINC01311 Gene

Evolution for LINC01311 Gene

Gene Tree for LINC01311 (if available)
Gene Tree for LINC01311 (if available)

No data available for Orthologs for LINC01311 Gene

Paralogs for LINC01311 Gene

No data available for Paralogs for LINC01311 Gene

Variants for LINC01311 Gene

Sequence variations from dbSNP and Humsavar for LINC01311 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000045135 -- 19,172,630(+) T/C non_coding_transcript_variant
rs1000138095 -- 19,172,248(+) G/C non_coding_transcript_variant
rs1002770163 -- 19,171,489(+) C/T upstream_transcript_variant
rs1003908144 -- 19,169,896(+) G/T upstream_transcript_variant
rs1006940296 -- 19,171,751(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01311 Gene

Variant ID Type Subtype PubMed ID
nsv834122 CNV loss 17160897
nsv588216 CNV gain 21841781
nsv588213 CNV gain 21841781
esv3575418 CNV gain 25503493

Additional Variant Information for LINC01311 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01311 Gene

Disorders for LINC01311 Gene

Additional Disease Information for LINC01311

No disorders were found for LINC01311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01311 Gene

Publications for LINC01311 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 58

Products for LINC01311 Gene

Sources for LINC01311 Gene

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