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Aliases for LINC01307 Gene

Subcategory (RNA class) for LINC01307 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01307 Gene

  • Long Intergenic Non-Protein Coding RNA 1307 2 3 5
  • RP11-157N3.1 3

External Ids for LINC01307 Gene

Summaries for LINC01307 Gene

GeneCards Summary for LINC01307 Gene

LINC01307 (Long Intergenic Non-Protein Coding RNA 1307) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01307 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01307 Gene

Genomics for LINC01307 Gene

GeneHancer (GH) Regulatory Elements for LINC01307 Gene

Promoters and enhancers for LINC01307 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I101321 Enhancer 0.3 dbSUPER 550.8 -0.3 -296 2.8 GLIS1 LINC01307 GC01P101313
GH01I101324 Enhancer 0.2 dbSUPER 550.8 +1.5 1486 0.5 LINC01307 GC01P101388
GH01I101369 Enhancer 0.8 dbSUPER 16.5 +50.3 50299 8.7 PKNOX1 SMAD1 BMI1 YBX1 BATF IRF4 RCOR1 ATF7 ETV6 FOS LINC01307 GC01P101388
GH01I101306 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.9 -13.5 -13490 6.7 HDGF PKNOX1 FOXA2 SMAD1 RB1 BMI1 BATF KLF5 RAD21 ZNF207 GC01P101312 LOC102723784 ENSG00000252765 S1PR1 LINC01307 GC01P101313
GH01I101350 Enhancer 0.5 dbSUPER 11.2 +29.3 29255 3.2 ZNF217 ZNF366 HLF CEBPB LINC01307 GC01P101388
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01307 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01307 Gene

Genomic Locations for LINC01307 Gene
chr1:101,323,337-101,390,303
(GRCh38/hg38)
Size:
66,967 bases
Orientation:
Plus strand
chr1:101,788,893-101,855,859
(GRCh37/hg19)

Genomic View for LINC01307 Gene

Genes around LINC01307 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01307 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01307 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01307 Gene

Proteins for LINC01307 Gene

Post-translational modifications for LINC01307 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01307 Gene

Domains & Families for LINC01307 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01307 Gene

Function for LINC01307 Gene

Phenotypes From GWAS Catalog for LINC01307 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01307 Gene

Localization for LINC01307 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01307 Gene

Pathways & Interactions for LINC01307 Gene

SuperPathways for LINC01307 Gene

No Data Available

Interacting Proteins for LINC01307 Gene

Gene Ontology (GO) - Biological Process for LINC01307 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01307 Gene

Drugs & Compounds for LINC01307 Gene

No Compound Related Data Available

Transcripts for LINC01307 Gene

mRNA/cDNA for LINC01307 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01307 Gene

No ASD Table

Relevant External Links for LINC01307 Gene

GeneLoc Exon Structure for
LINC01307
ECgene alternative splicing isoforms for
LINC01307

Expression for LINC01307 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01307 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01307 Gene:

LINC01307
genes like me logo Genes that share expression patterns with LINC01307: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01307 Gene

Orthologs for LINC01307 Gene

Evolution for LINC01307 Gene

ENSEMBL:
Gene Tree for LINC01307 (if available)
TreeFam:
Gene Tree for LINC01307 (if available)

No data available for Orthologs for LINC01307 Gene

Paralogs for LINC01307 Gene

No data available for Paralogs for LINC01307 Gene

Variants for LINC01307 Gene

Sequence variations from dbSNP and Humsavar for LINC01307 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000027675 -- 101,364,634(+) A/C/G intron_variant
rs1000087895 -- 101,364,192(+) TCTGCCTC/TCTGCCTCTGCCTC intron_variant
rs1000192389 -- 101,329,685(+) T/G intron_variant
rs1000224046 -- 101,333,350(+) A/T intron_variant
rs1000394535 -- 101,372,613(+) C/G intron_variant

Additional Variant Information for LINC01307 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01307

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01307 Gene

Disorders for LINC01307 Gene

Additional Disease Information for LINC01307

No disorders were found for LINC01307 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01307 Gene

Publications for LINC01307 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for LINC01307 Gene

Sources for LINC01307 Gene

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