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Aliases for LINC01305 Gene

Subcategory (RNA class) for LINC01305 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01305 Gene

  • Long Intergenic Non-Protein Coding RNA 1305 2 3 5

External Ids for LINC01305 Gene

Summaries for LINC01305 Gene

GeneCards Summary for LINC01305 Gene

LINC01305 (Long Intergenic Non-Protein Coding RNA 1305) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01305 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01305 Gene

Genomics for LINC01305 Gene

GeneHancer (GH) Regulatory Elements for LINC01305 Gene

Promoters and enhancers for LINC01305 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J174325 Promoter/Enhancer 1.3 Ensembl ENCODE 650.7 +0.2 171 0.8 ATF1 RB1 ARNT ZNF335 ZNF121 POLR2B EGR1 ZNF143 ATF7 EGR2 LINC01305 OLA1 GPR155 SP9
GH02J174331 Enhancer 1.2 VISTA UCNEbase 0.4 +5.8 5824 1.1 ZNF362 RNF2 ZNF189 SUZ12 ZNF148 ZFP69B ZNF335 ZNF692 SMARCA4 HDAC2 GPR155 SP9 LINC01305 LOC102724194
GH02J174328 Enhancer 0.5 ENCODE 0.7 +2.4 2381 0.2 PCBP2 L3MBTL2 SUZ12 EZH2 SP3 LINC01960 LINC01305 SP9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01305 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01305 Gene

Genomic Locations for LINC01305 Gene
chr2:174,326,027-174,330,643
(GRCh38/hg38)
Size:
4,617 bases
Orientation:
Plus strand
chr2:175,190,755-175,195,371
(GRCh37/hg19)
Size:
4,617 bases
Orientation:
Plus strand

Genomic View for LINC01305 Gene

Genes around LINC01305 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01305 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01305 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01305 Gene

Proteins for LINC01305 Gene

Post-translational modifications for LINC01305 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01305 Gene

Domains & Families for LINC01305 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01305 Gene

Function for LINC01305 Gene

Phenotypes From GWAS Catalog for LINC01305 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01305 Gene

Localization for LINC01305 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01305 Gene

Pathways & Interactions for LINC01305 Gene

SuperPathways for LINC01305 Gene

No Data Available

Interacting Proteins for LINC01305 Gene

Gene Ontology (GO) - Biological Process for LINC01305 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01305 Gene

Drugs & Compounds for LINC01305 Gene

No Compound Related Data Available

Transcripts for LINC01305 Gene

mRNA/cDNA for LINC01305 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01305 Gene

No ASD Table

Relevant External Links for LINC01305 Gene

GeneLoc Exon Structure for
LINC01305
ECgene alternative splicing isoforms for
LINC01305

Expression for LINC01305 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01305 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01305 Gene:

LINC01305
genes like me logo Genes that share expression patterns with LINC01305: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01305 Gene

Orthologs for LINC01305 Gene

Evolution for LINC01305 Gene

ENSEMBL:
Gene Tree for LINC01305 (if available)
TreeFam:
Gene Tree for LINC01305 (if available)

No data available for Orthologs for LINC01305 Gene

Paralogs for LINC01305 Gene

No data available for Paralogs for LINC01305 Gene

Variants for LINC01305 Gene

Sequence variations from dbSNP and Humsavar for LINC01305 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000071423 -- 174,327,663(+) G/A/C intron_variant
rs1000497347 -- 174,330,719(+) T/C downstream_transcript_variant
rs1000940470 -- 174,325,012(+) A/G upstream_transcript_variant
rs1000966678 -- 174,328,755(+) G/A non_coding_transcript_variant
rs1001066608 -- 174,329,035(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01305 Gene

Variant ID Type Subtype PubMed ID
nsv583666 CNV loss 21841781

Additional Variant Information for LINC01305 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01305

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01305 Gene

Disorders for LINC01305 Gene

Additional Disease Information for LINC01305

No disorders were found for LINC01305 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01305 Gene

Publications for LINC01305 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01305 Gene

Sources for LINC01305 Gene

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