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Aliases for LINC01301 Gene

Subcategory (RNA class) for LINC01301 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01301 Gene

  • Long Intergenic Non-Protein Coding RNA 1301 2 3 5

External Ids for LINC01301 Gene

Summaries for LINC01301 Gene

GeneCards Summary for LINC01301 Gene

LINC01301 (Long Intergenic Non-Protein Coding RNA 1301) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01301 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01301 Gene

Genomics for LINC01301 Gene

GeneHancer (GH) Regulatory Elements for LINC01301 Gene

Promoters and enhancers for LINC01301 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J060515 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.8 -770 4 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 SP3 RAB2A LINC01301 PIR33286 ENSG00000255321 NPM1P6
GH08J061077 Enhancer 0.9 Ensembl ENCODE 4.6 -561.3 -561270 0.9 MEIS2 PKNOX1 ATF1 NFRKB TEAD4 MAX ZBTB40 ZNF766 CBFA2T2 EZH2 CLVS1 LINC01301 GC08P061042 GC08M061136
GH08J060236 Enhancer 0.6 ENCODE 5 +279.8 279767 1.2 MEIS2 LEF1 TEAD4 BHLHE40 TAL1 CBFA2T3 EP300 FOSL1 MITF TCF12 CA8 LINC01301 PIR40544 SLC2A13P1
GH08J060233 Enhancer 0.6 ENCODE 4.8 +283.4 283378 0.2 CTCF TRIM22 RAD21 GATA3 XRCC5 HMBOX1 SMC3 ZNF143 ZNF444 CA8 LINC01301 PIR40544 SLC2A13P1
GH08J060225 Enhancer 0.5 ENCODE 5 +290.6 290604 1.8 MITF NFIB CEBPG NR2C2 CA8 LINC01301 PIR40544 SLC2A13P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01301 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01301 Gene

Genomic Locations for LINC01301 Gene
chr8:60,384,588-60,516,795
(GRCh38/hg38)
Size:
132,208 bases
Orientation:
Minus strand
chr8:61,297,147-61,429,354
(GRCh37/hg19)
Size:
132,208 bases
Orientation:
Minus strand

Genomic View for LINC01301 Gene

Genes around LINC01301 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01301 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01301 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01301 Gene

Proteins for LINC01301 Gene

Post-translational modifications for LINC01301 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01301 Gene

Domains & Families for LINC01301 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01301 Gene

Function for LINC01301 Gene

Phenotypes From GWAS Catalog for LINC01301 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01301 Gene

Localization for LINC01301 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01301 Gene

Pathways & Interactions for LINC01301 Gene

SuperPathways for LINC01301 Gene

No Data Available

Interacting Proteins for LINC01301 Gene

Gene Ontology (GO) - Biological Process for LINC01301 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01301 Gene

Drugs & Compounds for LINC01301 Gene

No Compound Related Data Available

Transcripts for LINC01301 Gene

mRNA/cDNA for LINC01301 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01301 Gene

No ASD Table

Relevant External Links for LINC01301 Gene

GeneLoc Exon Structure for
LINC01301
ECgene alternative splicing isoforms for
LINC01301

Expression for LINC01301 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01301 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01301 Gene:

LINC01301
genes like me logo Genes that share expression patterns with LINC01301: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01301 Gene

Orthologs for LINC01301 Gene

Evolution for LINC01301 Gene

ENSEMBL:
Gene Tree for LINC01301 (if available)
TreeFam:
Gene Tree for LINC01301 (if available)

No data available for Orthologs for LINC01301 Gene

Paralogs for LINC01301 Gene

No data available for Paralogs for LINC01301 Gene

Variants for LINC01301 Gene

Sequence variations from dbSNP and Humsavar for LINC01301 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000294950 -- 60,405,923(-) A/G intron_variant
rs1000443790 -- 60,408,434(-) T/G non_coding_transcript_variant
rs1000471757 -- 60,407,994(-) T/C intron_variant
rs1000500 -- 60,403,161(-) G/A non_coding_transcript_variant
rs1000603004 -- 60,412,539(-) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01301 Gene

Variant ID Type Subtype PubMed ID
nsv6217 CNV insertion 18451855
nsv831334 CNV gain 17160897

Additional Variant Information for LINC01301 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01301

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01301 Gene

Disorders for LINC01301 Gene

Additional Disease Information for LINC01301

No disorders were found for LINC01301 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01301 Gene

Publications for LINC01301 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01301 Gene

Sources for LINC01301 Gene

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