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Aliases for LINC01300 Gene

Subcategory (RNA class) for LINC01300 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01300 Gene

  • Long Intergenic Non-Protein Coding RNA 1300 2 3 5
  • CTD-3064M3.1 3

External Ids for LINC01300 Gene

Summaries for LINC01300 Gene

GeneCards Summary for LINC01300 Gene

LINC01300 (Long Intergenic Non-Protein Coding RNA 1300) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01300 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01300 Gene

Genomics for LINC01300 Gene

GeneHancer (GH) Regulatory Elements for LINC01300 Gene

Promoters and enhancers for LINC01300 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J141338 Enhancer 0.9 ENCODE 660.5 -0.9 -882 2.6 ATF1 PKNOX1 ARNT TCF12 ZNF766 FOS ATF7 REST MBD2 ATF4 LINC01300 SLC45A4 ENSG00000254291
GH08J141225 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 -113.1 -113058 3.4 PKNOX1 CLOCK FOXA2 MLX ARNT ZFP64 ARID4B NEUROD1 SIN3A DMAP1 SLC45A4 ENSG00000280035 DENND3 ENSG00000253307 LOC105375787 LINC01300 GPR20 PTP4A3
GH08J141326 Enhancer 0.8 Ensembl ENCODE 29.2 -13.0 -13026 2.6 BCOR CEBPB ZMYM3 CEBPG BCL11A POLR2A CEBPA RUNX3 EGR2 ENSG00000254291 LINC01300 ENSG00000253307 LOC105375787
GH08J141329 Enhancer 0.8 Ensembl ENCODE 28.8 -10.9 -10903 0.9 NR2F1 EBF1 MEF2B ZIC2 NR2F2 ZNF148 SKIL IKZF1 RUNX3 IKZF2 LINC01300 SLC45A4 LOC105375787 ENSG00000253307 ENSG00000254291
GH08J141307 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 7.8 -32.2 -32175 1.7 HDAC1 ATF1 RB1 SIN3A ZBTB40 ZBTB7B ZNF335 GLIS2 SCRT2 ATF7 SLC45A4 LINC01300 ENSG00000254291
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01300 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01300 Gene

Genomic Locations for LINC01300 Gene
chr8:141,340,549-141,344,621
(GRCh38/hg38)
Size:
4,073 bases
Orientation:
Plus strand
chr8:142,350,648-142,354,720
(GRCh37/hg19)
Size:
4,073 bases
Orientation:
Plus strand

Genomic View for LINC01300 Gene

Genes around LINC01300 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01300 Gene

Proteins for LINC01300 Gene

Post-translational modifications for LINC01300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01300 Gene

Domains & Families for LINC01300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01300 Gene

Function for LINC01300 Gene

Phenotypes From GWAS Catalog for LINC01300 Gene

Phenotypes for LINC01300 Gene

genes like me logo Genes that share phenotypes with LINC01300: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01300 Gene

Localization for LINC01300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01300 Gene

Pathways & Interactions for LINC01300 Gene

SuperPathways for LINC01300 Gene

No Data Available

Interacting Proteins for LINC01300 Gene

Gene Ontology (GO) - Biological Process for LINC01300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01300 Gene

Drugs & Compounds for LINC01300 Gene

No Compound Related Data Available

Transcripts for LINC01300 Gene

mRNA/cDNA for LINC01300 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01300 Gene

No ASD Table

Relevant External Links for LINC01300 Gene

GeneLoc Exon Structure for
LINC01300
ECgene alternative splicing isoforms for
LINC01300

Expression for LINC01300 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01300 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01300 Gene:

LINC01300
genes like me logo Genes that share expression patterns with LINC01300: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01300 Gene

Orthologs for LINC01300 Gene

Evolution for LINC01300 Gene

ENSEMBL:
Gene Tree for LINC01300 (if available)
TreeFam:
Gene Tree for LINC01300 (if available)

No data available for Orthologs for LINC01300 Gene

Paralogs for LINC01300 Gene

No data available for Paralogs for LINC01300 Gene

Variants for LINC01300 Gene

Sequence variations from dbSNP and Humsavar for LINC01300 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001182184 -- 141,342,365(+) A/G non_coding_transcript_variant
rs1001517519 -- 141,342,474(+) A/G non_coding_transcript_variant
rs1001591179 -- 141,342,214(+) T/C intron_variant
rs1001849649 -- 141,343,408(+) C/T intron_variant
rs1001923450 -- 141,343,232(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01300 Gene

Variant ID Type Subtype PubMed ID
nsv949996 CNV deletion 24416366
nsv831484 CNV loss 17160897
nsv6429 CNV deletion 18451855
nsv612577 CNV loss 21841781
nsv612576 CNV loss 21841781
nsv612575 CNV gain 21841781
nsv509285 CNV insertion 20534489
nsv470240 CNV loss 18288195
nsv465958 CNV loss 19166990
nsv465957 CNV loss 19166990
nsv465956 CNV gain 19166990
nsv1126125 CNV deletion 24896259
esv3619062 CNV gain 21293372
esv3619061 CNV gain 21293372
esv2737756 CNV deletion 23290073
dgv7331n100 CNV gain 25217958
dgv7330n100 CNV gain 25217958

Additional Variant Information for LINC01300 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01300

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01300 Gene

Disorders for LINC01300 Gene

Additional Disease Information for LINC01300

No disorders were found for LINC01300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01300 Gene

Publications for LINC01300 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01300 Gene

Sources for LINC01300 Gene

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