Aliases for LINC01299 Gene

Subcategory (RNA class) for LINC01299 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01299 Gene

  • Long Intergenic Non-Protein Coding RNA 1299 2 3 5
  • LINC01299 2 168
  • CTD-3025N20.2 3
  • NONHSAG050396 92

External Ids for LINC01299 Gene

Summaries for LINC01299 Gene

GeneCards Summary for LINC01299 Gene

LINC01299 (Long Intergenic Non-Protein Coding RNA 1299) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01299 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01299 Gene

Genomics for LINC01299 Gene

GeneHancer (GH) Regulatory Elements for LINC01299 Gene

Promoters and enhancers for LINC01299 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J065835 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.6 -276.6 -276569 8.5 HNRNPK ZBTB40 ZNF217 EP300 SIN3A TCF12 NRF1 POLR2G GTF2E2 PHF8 PDE7A MTFR1 DNAJC5B LINC01299 ENSG00000272192 lnc-PDE7A-4 lnc-ARMC1-5
GH08J064755 Enhancer 1 FANTOM5 ENCODE 10.5 +805.7 805686 2.3 TCF12 SP1 EP300 RELA REST NFYB BCL11A POLR2A FOS ZNF207 CYP7B1 LINC01299 ENSG00000254006 lnc-ARMC1-8 piR-49400-091 RF00017-7079
GH08J065979 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.6 -418.9 -418920 6.6 RXRA EP300 SIN3A SP1 RELA MEF2C RCOR1 REST TRIM22 NFYB DNAJC5B lnc-PDE7A-5 PDE7A MTFR1 LINC01299 TRIM55 piR-48369-199 LOC105375883
GH08J065786 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 6.1 -225.2 -225247 4.9 USF1 TEAD4 CTCF RBM25 OSR2 ZNF316 NCOR1 MAX MEF2B BCOR MTFR1 PDE7A DNAJC5B RRS1 RRS1-AS1 ADHFE1 LINC01299 L13714-448 piR-31292-201 lnc-PDE7A-4
GH08J065794 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 6.1 -232.3 -232277 1.6 POLR2G NCOR1 TEAD4 KDM6A TEAD1 ZBTB26 RBM25 ZSCAN9 POLR2A KMT2B LINC01299 MTFR1 L13714-448 piR-31292-201 PDE7A lnc-PDE7A-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01299 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01299 Gene

Genomic Locations for LINC01299 Gene
chr8:65,526,438-65,562,781
(GRCh38/hg38)
Size:
36,344 bases
Orientation:
Minus strand
chr8:66,439,243-66,475,015
(GRCh37/hg19)
Size:
35,773 bases
Orientation:
Minus strand

Genomic View for LINC01299 Gene

Genes around LINC01299 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01299 Gene

Proteins for LINC01299 Gene

Post-translational modifications for LINC01299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01299 Gene

Domains & Families for LINC01299 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01299 Gene

Function for LINC01299 Gene

Phenotypes From GWAS Catalog for LINC01299 Gene

Phenotypes for LINC01299 Gene

GenomeRNAi human phenotypes for LINC01299:
genes like me logo Genes that share phenotypes with LINC01299: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01299 Gene

Localization for LINC01299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01299 Gene

Pathways & Interactions for LINC01299 Gene

PathCards logo

SuperPathways for LINC01299 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01299 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01299 Gene

Drugs & Compounds for LINC01299 Gene

No Compound Related Data Available

Transcripts for LINC01299 Gene

mRNA/cDNA for LINC01299 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01299 Gene

No ASD Table

Relevant External Links for LINC01299 Gene

GeneLoc Exon Structure for
LINC01299

Expression for LINC01299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01299 Gene

genes like me logo Genes that share expression patterns with LINC01299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01299 Gene

Orthologs for LINC01299 Gene

Evolution for LINC01299 Gene

ENSEMBL:
Gene Tree for LINC01299 (if available)
TreeFam:
Gene Tree for LINC01299 (if available)

No data available for Orthologs for LINC01299 Gene

Paralogs for LINC01299 Gene

No data available for Paralogs for LINC01299 Gene

Variants for LINC01299 Gene

Additional dbSNP identifiers (rs#s) for LINC01299 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01299 Gene

Variant ID Type Subtype PubMed ID
esv2761434 CNV gain 21179565
nsv397599 CNV deletion 16902084

Additional Variant Information for LINC01299 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01299

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01299 Gene

Disorders for LINC01299 Gene

Additional Disease Information for LINC01299

No disorders were found for LINC01299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01299 Gene

Publications for LINC01299 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC01299 Gene

Products for LINC01299 Gene

Sources for LINC01299 Gene