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Aliases for LINC01299 Gene

Subcategory (RNA class) for LINC01299 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01299 Gene

  • Long Intergenic Non-Protein Coding RNA 1299 2 3 5
  • CTD-3025N20.2 3

External Ids for LINC01299 Gene

Summaries for LINC01299 Gene

GeneCards Summary for LINC01299 Gene

LINC01299 (Long Intergenic Non-Protein Coding RNA 1299) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01299 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01299 Gene

Genomics for LINC01299 Gene

GeneHancer (GH) Regulatory Elements for LINC01299 Gene

Promoters and enhancers for LINC01299 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J065836 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.6 -277.3 -277330 7 HDGF PKNOX1 CLOCK MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 PDE7A MTFR1 C8orf44 DNAJC5B LINC01299 ENSG00000272192 GC08M065824
GH08J064755 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.5 +805.7 805685 2.3 PKNOX1 SMAD1 RB1 YBX1 BATF IRF4 ZNF207 ATF7 ETV6 IKZF2 CYP7B1 LINC01299 LOC105375878 PIR54141 ENSG00000254330 GC08P064658
GH08J065980 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 -419.3 -419325 4.1 PKNOX1 SMAD1 STAT5A BMI1 BATF KLF5 IRF4 ZNF207 ZNF143 ATF7 DNAJC5B GC08M065983 PDE7A MTFR1 LINC01299 GC08P065965 LOC105375883
GH08J065944 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -388.0 -387993 12.7 PKNOX1 NEUROD1 SIN3A FEZF1 ZNF2 IRF4 ZNF143 FOS DEK SP3 PDE7A MTFR1 DNAJC5B LINC01299 ENSG00000272010 RRS1 GC08P065965 GC08M065874
GH08J065972 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -411.3 -411310 2.6 PKNOX1 KLF17 BRCA1 ZNF335 ZNF366 ZSCAN5C SCRT2 RCOR1 FOS CEBPB DNAJC5B MTFR1 LINC01299 ENSG00000272010 PDE7A GC08P065965 GC08M065983
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01299 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01299 Gene

Genomic Locations for LINC01299 Gene
35,773 bases
Minus strand
35,773 bases
Minus strand

Genomic View for LINC01299 Gene

Genes around LINC01299 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01299 Gene

Proteins for LINC01299 Gene

Post-translational modifications for LINC01299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01299 Gene

Domains & Families for LINC01299 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01299 Gene

Function for LINC01299 Gene

Phenotypes From GWAS Catalog for LINC01299 Gene

Phenotypes for LINC01299 Gene

GenomeRNAi human phenotypes for LINC01299:
genes like me logo Genes that share phenotypes with LINC01299: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01299 Gene

Localization for LINC01299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01299 Gene

Pathways & Interactions for LINC01299 Gene

SuperPathways for LINC01299 Gene

No Data Available

Interacting Proteins for LINC01299 Gene

Gene Ontology (GO) - Biological Process for LINC01299 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01299 Gene

Drugs & Compounds for LINC01299 Gene

No Compound Related Data Available

Transcripts for LINC01299 Gene

mRNA/cDNA for LINC01299 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01299 Gene

No ASD Table

Relevant External Links for LINC01299 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01299 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01299 Gene:

genes like me logo Genes that share expression patterns with LINC01299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01299 Gene

Orthologs for LINC01299 Gene

Evolution for LINC01299 Gene

Gene Tree for LINC01299 (if available)
Gene Tree for LINC01299 (if available)

No data available for Orthologs for LINC01299 Gene

Paralogs for LINC01299 Gene

No data available for Paralogs for LINC01299 Gene

Variants for LINC01299 Gene

Sequence variations from dbSNP and Humsavar for LINC01299 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000055250 -- 65,551,707(-) C/A intron_variant
rs1000060958 -- 65,563,907(-) T/C upstream_transcript_variant
rs1000119759 -- 65,555,059(-) T/C intron_variant
rs1000370598 -- 65,536,673(-) A/G intron_variant
rs1000487513 -- 65,531,851(-) A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01299 Gene

Variant ID Type Subtype PubMed ID
esv2761434 CNV gain 21179565
nsv397599 CNV deletion 16902084

Additional Variant Information for LINC01299 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01299 Gene

Disorders for LINC01299 Gene

Additional Disease Information for LINC01299

No disorders were found for LINC01299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01299 Gene

Publications for LINC01299 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01299 Gene

Sources for LINC01299 Gene

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