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Aliases for LINC01298 Gene

Subcategory (RNA class) for LINC01298 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01298 Gene

  • Long Intergenic Non-Protein Coding RNA 1298 2 3 5
  • Chromosome 8 Open Reading Frame 69 2
  • C8orf69 3

External Ids for LINC01298 Gene

Previous HGNC Symbols for LINC01298 Gene

  • C8orf69

Summaries for LINC01298 Gene

GeneCards Summary for LINC01298 Gene

LINC01298 (Long Intergenic Non-Protein Coding RNA 1298) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01298 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01298 Gene

Genomics for LINC01298 Gene

GeneHancer (GH) Regulatory Elements for LINC01298 Gene

Promoters and enhancers for LINC01298 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J095215 Enhancer 0.7 Ensembl dbSUPER 650.7 +1.3 1273 0.2 POLR2A IKZF1 VEZF1 ZBTB33 SPI1 GC08M095215 LINC01298 PLEKHF2 C8orf37-AS1
GH08J094718 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 +496.3 496293 2.9 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 DPY19L4 VIRMA INTS8 RBM12B C8orf37 ENSG00000254283 LINC01298 PSMA2P2 TMEM67 ENSG00000272509
GH08J095209 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +4.1 4056 5.3 HDGF ATF1 PKNOX1 FOXA2 NEUROD1 SIN3A DMAP1 ZBTB7B TCF12 ZNF207 PLEKHF2 TP53INP1 LINC01298 GC08M095215 C8orf37-AS1
GH08J095223 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -8.9 -8929 4.5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 FOS SP5 MXD4 ZNF592 ENSG00000254248 PLEKHF2 CCNE2 C8orf37 LINC01298 C8orf37-AS1 TRS-AGA2-5
GH08J095228 Enhancer 1.1 ENCODE dbSUPER 0.4 -13.1 -13098 2.2 HDGF PKNOX1 IRF4 TCF12 ZNF766 GATA2 ZNF143 FOS ATF7 RUNX3 PLEKHF2 C8orf37 LINC01298 C8orf37-AS1 TRS-AGA2-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01298 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01298 Gene

Genomic Locations for LINC01298 Gene
chr8:95,207,007-95,216,374
(GRCh38/hg38)
Size:
9,368 bases
Orientation:
Minus strand
chr8:96,219,235-96,228,602
(GRCh37/hg19)
Size:
9,368 bases
Orientation:
Minus strand

Genomic View for LINC01298 Gene

Genes around LINC01298 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01298 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01298 Gene

Proteins for LINC01298 Gene

Post-translational modifications for LINC01298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01298 Gene

Domains & Families for LINC01298 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01298 Gene

Function for LINC01298 Gene

Phenotypes From GWAS Catalog for LINC01298 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01298 Gene

Localization for LINC01298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01298 Gene

Pathways & Interactions for LINC01298 Gene

SuperPathways for LINC01298 Gene

No Data Available

Interacting Proteins for LINC01298 Gene

Gene Ontology (GO) - Biological Process for LINC01298 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01298 Gene

Drugs & Compounds for LINC01298 Gene

No Compound Related Data Available

Transcripts for LINC01298 Gene

mRNA/cDNA for LINC01298 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01298 Gene

No ASD Table

Relevant External Links for LINC01298 Gene

GeneLoc Exon Structure for
LINC01298
ECgene alternative splicing isoforms for
LINC01298

Expression for LINC01298 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01298 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01298 Gene:

LINC01298
genes like me logo Genes that share expression patterns with LINC01298: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01298 Gene

Orthologs for LINC01298 Gene

Evolution for LINC01298 Gene

ENSEMBL:
Gene Tree for LINC01298 (if available)
TreeFam:
Gene Tree for LINC01298 (if available)

No data available for Orthologs for LINC01298 Gene

Paralogs for LINC01298 Gene

No data available for Paralogs for LINC01298 Gene

Variants for LINC01298 Gene

Sequence variations from dbSNP and Humsavar for LINC01298 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000052722 -- 95,208,749(-) G/A intron_variant
rs1000135410 -- 95,217,564(-) G/A upstream_transcript_variant
rs1000179275 -- 95,207,581(-) C/T intron_variant
rs1000332658 -- 95,214,677(-) G/C intron_variant
rs1000366281 -- 95,215,702(-) GGGGGG/GGGGG/GGGGGGG intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01298 Gene

Variant ID Type Subtype PubMed ID
esv23589 CNV gain 19812545
esv988068 CNV deletion 20482838
nsv465741 CNV loss 19166990
nsv516035 CNV gain+loss 19592680
nsv523655 CNV loss 19592680
nsv611758 CNV loss 21841781
nsv611759 CNV loss 21841781
nsv6315 CNV deletion 18451855

Additional Variant Information for LINC01298 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01298

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01298 Gene

Disorders for LINC01298 Gene

Additional Disease Information for LINC01298

No disorders were found for LINC01298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01298 Gene

Publications for LINC01298 Gene

No publications were found for LINC01298 Gene.

Products for LINC01298 Gene

Sources for LINC01298 Gene

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