Aliases for LINC01297 Gene

Data sources for LINC01297 Gene:

RNA type for LINC01297 Gene

lncRNA

Aliases for LINC01297 Gene

External Ids for LINC01297 Gene

Previous GeneCards Identifiers for LINC01297 Gene

  • GC14M019269
  • GC22P015748

Summaries for LINC01297 Gene

GeneCards Summary for LINC01297 Gene

LINC01297 (Long Intergenic Non-Protein Coding RNA 1297) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01297 include Retinitis Pigmentosa 11 and Retinitis Pigmentosa.

Additional gene information for LINC01297 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01297 Gene

Genomics for LINC01297 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01297 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J019349 Enhancer 0.2 Ensembl 0.3 +34.6 34622 1.1 piR-48287-002 NONHSAG014339.2 LOC105378174 LINC01297 LINC01297-DUXAP10-NBEAP6 POTEG POTEM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01297 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01297 Gene

Latest Assembly
chr14:19,344,329-19,384,587
(GRCh38/hg38)
Size:
40,259 bases
Orientation:
Minus strand

Previous Assembly
chr14:19,603,418-19,643,377
(GRCh37/hg19 by Entrez Gene)
Size:
39,960 bases
Orientation:
Plus strand

Genomic View for LINC01297 Gene

Genes around LINC01297 on UCSC Golden Path with GeneCards custom track
LINC01297 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01297 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01297 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01297 Gene

Proteins for LINC01297 Gene

Post-translational modifications for LINC01297 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01297 Gene

Domains & Families for LINC01297 Gene

Gene Families for LINC01297 Gene

genes like me logo Genes that share domains with LINC01297: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01297 Gene

Function for LINC01297 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01297 Gene

Localization for LINC01297 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01297 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01297 Gene

Pathways & Interactions for LINC01297 Gene

PathCards logo

SuperPathways for LINC01297 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01297 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01297 Gene

Drugs & Compounds for LINC01297 Gene

No Compound Related Data Available

Transcripts for LINC01297 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01297 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007847AD_9606 lncRNA 4222 3

Ensembl: ENST00000621052 (view in UCSC) ,

LNCipedia: LINC01297:6,

NONCODE: NONHSAT035525.2,

URS0000788BE4_9606 lncRNA 261 3

Ensembl: ENST00000620186 (view in UCSC) ,

LncBook: HSALNT0207728,

LNCipedia: LINC01297:4,

URS000194B0D2_9606 lncRNA 3747 1

RefSeq: NR_164166,

URS000194B0E6_9606 lncRNA 1155 1

RefSeq: NR_132385,

URS00008B6DC6_9606 lncRNA 784 2

LncBook: HSALNT0207725,

NONCODE: NONHSAT035466.2,

LINC01297 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01297 Gene

No ASD Table

Relevant External Links for LINC01297 Gene

GeneLoc Exon Structure for
LINC01297

No data available for mRNA/cDNA for LINC01297 Gene

Expression for LINC01297 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01297

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01297 Gene

Orthologs for LINC01297 Gene

Evolution for LINC01297 Gene

ENSEMBL:
Gene Tree for LINC01297 (if available)
TreeFam:
Gene Tree for LINC01297 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01297

No data available for Orthologs for LINC01297 Gene

Paralogs for LINC01297 Gene

No data available for Paralogs for LINC01297 Gene

Variants for LINC01297 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01297 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01297 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01297
Leiden Open Variation Database (LOVD)
LINC01297

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01297 Gene

Disorders for LINC01297 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01297 Gene - From: COP

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
retinitis pigmentosa
  • rp
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01297

genes like me logo Genes that share disorders with LINC01297: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01297 Gene

Publications for LINC01297 Gene

No publications were found for LINC01297 Gene.

Products for LINC01297 Gene

Sources for LINC01297 Gene