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Aliases for LINC01296 Gene

Subcategory (RNA class) for LINC01296 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LINC01296 Gene

  • Long Intergenic Non-Protein Coding RNA 1296 3

External Ids for LINC01296 Gene

Previous GeneCards Identifiers for LINC01296 Gene

  • GC14P019076
  • GC14P019077
  • GC14P019095
  • GC14P019096
  • GC14P019115
  • GC14P019136
  • GC14P019156

Summaries for LINC01296 Gene

GeneCards Summary for LINC01296 Gene

LINC01296 (Long Intergenic Non-Protein Coding RNA 1296) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC01296 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01296 Gene

Genomics for LINC01296 Gene

GeneHancer (GH) Regulatory Elements for LINC01296 Gene

Promoters and enhancers for LINC01296 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I019062 Promoter 0.5 Ensembl 550.8 +0.4 423 1.2 LINC01296 DUXAP9 PIR51599
GH14I019063 Enhancer 0.2 Ensembl 550.8 +1.8 1824 1.2 LINC01296 DUXAP9 PIR51599
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01296 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01296 Gene

Genomic Locations for LINC01296 Gene
chr14:19,062,377-19,107,497
(GRCh38/hg38)
Size:
45,121 bases
Orientation:
Plus strand
chr14:19,887,179-19,894,794
(GRCh37/hg19)

Genomic View for LINC01296 Gene

Genes around LINC01296 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01296 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01296 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01296 Gene

Proteins for LINC01296 Gene

Post-translational modifications for LINC01296 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01296 Gene

Domains & Families for LINC01296 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01296 Gene

Function for LINC01296 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01296 Gene

Localization for LINC01296 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01296 Gene

Pathways & Interactions for LINC01296 Gene

SuperPathways for LINC01296 Gene

No Data Available

Interacting Proteins for LINC01296 Gene

Gene Ontology (GO) - Biological Process for LINC01296 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01296 Gene

Drugs & Compounds for LINC01296 Gene

No Compound Related Data Available

Transcripts for LINC01296 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01296 Gene

No ASD Table

Relevant External Links for LINC01296 Gene

GeneLoc Exon Structure for
LINC01296

No data available for mRNA/cDNA for LINC01296 Gene

Expression for LINC01296 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01296 Gene

genes like me logo Genes that share expression patterns with LINC01296: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01296 Gene

Orthologs for LINC01296 Gene

No data available for Orthologs and Evolution for LINC01296 Gene

Paralogs for LINC01296 Gene

No data available for Paralogs for LINC01296 Gene

Variants for LINC01296 Gene

Sequence variations from dbSNP and Humsavar for LINC01296 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1003343762 -- 19,066,981(+) T/C intron_variant
rs1004574811 -- 19,096,593(+) G/A intron_variant, non_coding_transcript_variant
rs1007296058 -- 19,062,784(+) C/A intron_variant
rs1007859038 -- 19,081,990(+) C/G intron_variant
rs1007885831 -- 19,078,285(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01296 Gene

Variant ID Type Subtype PubMed ID
dgv1158e59 CNV duplication 20981092
dgv1160e59 CNV duplication 20981092
dgv1161e59 CNV duplication 20981092
dgv1162e59 CNV duplication 20981092
dgv1163e59 CNV duplication 20981092
dgv1175e59 CNV duplication 20981092
dgv1176e59 CNV duplication 20981092
dgv1177e59 CNV duplication 20981092
dgv1178e59 CNV duplication 20981092
dgv1749n100 CNV gain 25217958
dgv1750n100 CNV gain+loss 25217958
dgv1751n100 CNV loss 25217958
dgv1752n100 CNV gain 25217958
dgv1753n100 CNV gain 25217958
dgv1754n100 CNV gain+loss 25217958
dgv1755n100 CNV gain 25217958
dgv1756n100 CNV loss 25217958
dgv1757n100 CNV gain 25217958
dgv1758n100 CNV loss 25217958
dgv1759n100 CNV gain 25217958
dgv1760n100 CNV gain+loss 25217958
dgv1761n100 CNV gain+loss 25217958
dgv1762n100 CNV loss 25217958
dgv1763n100 CNV gain 25217958
dgv1764n100 CNV loss 25217958
dgv1765n100 CNV gain+loss 25217958
dgv1766n100 CNV gain 25217958
dgv1767n100 CNV loss 25217958
dgv1768n100 CNV gain 25217958
dgv1769n100 CNV gain 25217958
dgv1770n100 CNV gain+loss 25217958
dgv1771n100 CNV loss 25217958
dgv30n82 CNV duplication 23825009
dgv33e203 CNV gain+loss 21179565
dgv3489n54 CNV gain 21841781
dgv3494n54 CNV loss 21841781
dgv3511n54 CNV loss 21841781
dgv360n67 CNV gain 20364138
dgv45e180 CNV loss 20482838
esv1005804 OTHER inversion 20482838
esv23873 CNV gain+loss 19812545
esv2748433 CNV deletion 23290073
esv2759971 CNV gain+loss 17122850
esv3335978 CNV duplication 20981092
esv3344057 CNV duplication 20981092
esv33527 CNV gain+loss 17666407
esv3353275 CNV duplication 20981092
esv3376454 CNV duplication 20981092
esv3393707 CNV duplication 20981092
esv3413501 CNV duplication 20981092
esv3428491 CNV duplication 20981092
esv3437684 CNV duplication 20981092
esv3442251 CNV duplication 20981092
esv3445630 CNV duplication 20981092
esv3448269 CNV duplication 20981092
esv3584743 CNV gain 24956385
esv3892461 CNV gain 25118596
esv3892464 CNV gain 25118596
nsv1037353 CNV gain 25217958
nsv1048150 CNV gain+loss 25217958
nsv1048393 CNV gain+loss 25217958
nsv1075859 CNV duplication 25765185
nsv1075860 CNV duplication 25765185
nsv1075861 CNV duplication 25765185
nsv1076404 CNV duplication 25765185
nsv1076405 CNV duplication 25765185
nsv1110856 OTHER inversion 24896259
nsv1115454 CNV duplication 24896259
nsv1115455 CNV duplication 24896259
nsv1118529 CNV duplication 24896259
nsv1124680 CNV duplication 24896259
nsv1132378 CNV duplication 24896259
nsv1132379 CNV duplication 24896259
nsv1132380 CNV duplication 24896259
nsv1139594 CNV duplication 24896259
nsv1141240 CNV duplication 24896259
nsv1148767 CNV duplication 26484159
nsv1148918 CNV duplication 26484159
nsv1150751 CNV duplication 26484159
nsv1151924 CNV duplication 26484159
nsv1160151 CNV duplication 26073780
nsv1160152 CNV duplication 26073780
nsv428292 CNV gain+loss 18775914
nsv433422 CNV gain 18776910
nsv436829 CNV insertion 17901297
nsv563705 CNV loss 21841781
nsv563706 CNV loss 21841781
nsv563709 CNV loss 21841781
nsv563717 CNV loss 21841781
nsv563718 CNV loss 21841781
nsv563719 CNV loss 21841781
nsv563720 CNV loss 21841781
nsv7248 OTHER inversion 18451855
nsv819711 CNV loss 19587683
nsv832729 CNV gain+loss 17160897
nsv832730 CNV gain+loss 17160897
nsv832731 CNV gain 17160897
nsv9117 CNV gain+loss 18304495
nsv951950 CNV duplication 24416366
nsv951955 CNV duplication 24416366
nsv974301 CNV duplication 23825009
nsv974302 CNV duplication 23825009
nsv974303 CNV duplication 23825009
nsv976307 CNV duplication 23825009
nsv976390 CNV duplication 23825009
nsv977434 CNV duplication 23825009
nsv983792 CNV duplication 23825009
nsv983882 CNV duplication 23825009

Additional Variant Information for LINC01296 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01296

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01296 Gene

Disorders for LINC01296 Gene

Additional Disease Information for LINC01296

No disorders were found for LINC01296 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01296 Gene

Publications for LINC01296 Gene

  1. Overexpression of long non-coding RNA-CTD903 inhibits colorectal cancer invasion and migration by repressing Wnt/β-catenin signaling and predicts favorable prognosis. (PMID: 27035092) Yuan Z … Wang L (International journal of oncology 2016) 58
  2. Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer. (PMID: 25894381) Qiu JJ … Yan JB (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2015) 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 58

Products for LINC01296 Gene

Sources for LINC01296 Gene

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