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Aliases for LINC01293 Gene

Subcategory (RNA class) for LINC01293 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01293 Gene

  • Long Intergenic Non-Protein Coding RNA 1293 2 3 5
  • TCONS_00002938 3

External Ids for LINC01293 Gene

Summaries for LINC01293 Gene

GeneCards Summary for LINC01293 Gene

LINC01293 (Long Intergenic Non-Protein Coding RNA 1293) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01293 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01293 Gene

Genomics for LINC01293 Gene

GeneHancer (GH) Regulatory Elements for LINC01293 Gene

Promoters and enhancers for LINC01293 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J074939 Enhancer 0.9 ENCODE 650.7 +0.8 787 1.5 FOXA2 MLX ARID4B ZNF48 TCF12 NFKBIZ SP5 MIER2 PPARG KAT8 LINC01293 LINC01291 POLE4
GH02J074937 Enhancer 0.8 ENCODE 650.7 -1.7 -1700 0.2 DRAP1 SOX13 FOXA2 SAP130 ARID4B ZNF644 KMT2B ZSCAN9 RARA GATA3 LINC01293 LINC01291 LOC105374809
GH02J074842 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.5 -91.8 -91785 10 FOXA2 ZFP64 ARID4B NEUROD1 SIN3A ETS1 ATF7 FOS RUNX3 DEK HK2 SEMA4F M1AP ENSG00000236209 LINC01293 LBX2 GC02M074813 GC02M074860
GH02J074935 Enhancer 0.5 ENCODE 0.7 -3.0 -3040 1.1 MAFG CUX1 NFE2 EMSY MAFK NFE2L2 ENSG00000236209 LINC01293 LOC105374809 LINC01291
GH02J074945 Enhancer 0.6 FANTOM5 0.4 +6.1 6134 0 CBFB NR2F1 TRIM22 STAT5A BMI1 IKZF1 TARDBP NBN ATF7 M1AP SEMA4F LINC01293 POLE4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01293 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01293 Gene

Genomic Locations for LINC01293 Gene
chr2:74,939,389-74,942,670
(GRCh38/hg38)
Size:
3,282 bases
Orientation:
Plus strand
chr2:75,167,385-75,169,797
(GRCh37/hg19)
Size:
2,413 bases
Orientation:
Plus strand

Genomic View for LINC01293 Gene

Genes around LINC01293 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01293 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01293 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01293 Gene

Proteins for LINC01293 Gene

Post-translational modifications for LINC01293 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01293 Gene

Domains & Families for LINC01293 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01293 Gene

Function for LINC01293 Gene

Phenotypes From GWAS Catalog for LINC01293 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01293 Gene

Localization for LINC01293 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01293 Gene

Pathways & Interactions for LINC01293 Gene

SuperPathways for LINC01293 Gene

No Data Available

Interacting Proteins for LINC01293 Gene

Gene Ontology (GO) - Biological Process for LINC01293 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01293 Gene

Drugs & Compounds for LINC01293 Gene

No Compound Related Data Available

Transcripts for LINC01293 Gene

mRNA/cDNA for LINC01293 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01293 Gene

No ASD Table

Relevant External Links for LINC01293 Gene

GeneLoc Exon Structure for
LINC01293
ECgene alternative splicing isoforms for
LINC01293

Expression for LINC01293 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01293 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01293 Gene:

LINC01293
genes like me logo Genes that share expression patterns with LINC01293: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01293 Gene

Orthologs for LINC01293 Gene

Evolution for LINC01293 Gene

ENSEMBL:
Gene Tree for LINC01293 (if available)
TreeFam:
Gene Tree for LINC01293 (if available)

No data available for Orthologs for LINC01293 Gene

Paralogs for LINC01293 Gene

No data available for Paralogs for LINC01293 Gene

Variants for LINC01293 Gene

Sequence variations from dbSNP and Humsavar for LINC01293 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000772657 -- 74,942,050(+) T/G non_coding_transcript_variant
rs1001100939 -- 74,937,822(+) T/C upstream_transcript_variant
rs1001179325 -- 74,937,630(+) C/G upstream_transcript_variant
rs1001746056 -- 74,943,062(+) A/G downstream_transcript_variant
rs1002629255 -- 74,939,997(+) ACGCATAC/AC non_coding_transcript_variant

Additional Variant Information for LINC01293 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01293

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01293 Gene

Disorders for LINC01293 Gene

Additional Disease Information for LINC01293

No disorders were found for LINC01293 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01293 Gene

Publications for LINC01293 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01293 Gene

Sources for LINC01293 Gene

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