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Aliases for LINC01291 Gene

Subcategory (RNA class) for LINC01291 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01291 Gene

  • Long Intergenic Non-Protein Coding RNA 1291 2 3 5

External Ids for LINC01291 Gene

Previous GeneCards Identifiers for LINC01291 Gene

  • GC02P074919

Summaries for LINC01291 Gene

GeneCards Summary for LINC01291 Gene

LINC01291 (Long Intergenic Non-Protein Coding RNA 1291) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01291 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01291 Gene

Genomics for LINC01291 Gene

GeneHancer (GH) Regulatory Elements for LINC01291 Gene

Promoters and enhancers for LINC01291 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I074908 Enhancer 0.6 Ensembl 550.8 -0.1 -79 0.7 DRAP1 SOX5 TFAP4 SAP130 ARID4B SIN3A ELF1 KLF4 SREBF1 MTA3 LINC01291 GC02P074881 PIR41645
GH02I074957 Promoter/Enhancer 1.6 Ensembl ENCODE 97.7 +49.7 49714 1.8 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF766 POLE4 LINC01291 AUP1 TTC31 MOGS CCDC142 PCGF1 MOB1A HTRA2 WBP1
GH02I074939 Enhancer 0.9 ENCODE 65.8 +31.0 31045 1.5 FOXA2 MLX ARID4B ZNF48 TCF12 SP5 MIER2 PPARG KAT8 NFIL3 LINC01293 LINC01291 POLE4
GH02I075041 Enhancer 0.4 Ensembl 59.3 +132.8 132770 0.6 IKZF1 ELF1 IKZF2 LINC01291 GC02M075053 GC02M075054 GC02P074991
GH02I074991 Enhancer 0.9 FANTOM5 ENCODE 13.7 +82.9 82936 1.2 ATF1 RFX1 SMAD5 NR4A1 REST GABPA MITF KLF16 ZNF184 IKZF1 GC02P074990 GC02P074991 LINC01291 GC02M075053 GC02M075054
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01291 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01291 Gene

Genomic Locations for LINC01291 Gene
chr2:74,909,131-74,938,418
(GRCh38/hg38)
Size:
29,288 bases
Orientation:
Plus strand
chr2:75,145,275-75,165,545
(GRCh37/hg19)

Genomic View for LINC01291 Gene

Genes around LINC01291 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01291 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01291 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01291 Gene

Proteins for LINC01291 Gene

Post-translational modifications for LINC01291 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01291 Gene

Domains & Families for LINC01291 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01291 Gene

Function for LINC01291 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01291 Gene

Localization for LINC01291 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01291 Gene

Pathways & Interactions for LINC01291 Gene

SuperPathways for LINC01291 Gene

No Data Available

Interacting Proteins for LINC01291 Gene

Gene Ontology (GO) - Biological Process for LINC01291 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01291 Gene

Drugs & Compounds for LINC01291 Gene

No Compound Related Data Available

Transcripts for LINC01291 Gene

mRNA/cDNA for LINC01291 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01291 Gene

No ASD Table

Relevant External Links for LINC01291 Gene

GeneLoc Exon Structure for
LINC01291
ECgene alternative splicing isoforms for
LINC01291

Expression for LINC01291 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01291 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01291 Gene:

LINC01291
genes like me logo Genes that share expression patterns with LINC01291: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01291 Gene

Orthologs for LINC01291 Gene

Evolution for LINC01291 Gene

ENSEMBL:
Gene Tree for LINC01291 (if available)
TreeFam:
Gene Tree for LINC01291 (if available)

No data available for Orthologs for LINC01291 Gene

Paralogs for LINC01291 Gene

No data available for Paralogs for LINC01291 Gene

Variants for LINC01291 Gene

Sequence variations from dbSNP and Humsavar for LINC01291 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000051692 -- 74,932,632(+) TAGTTTA/TA intron_variant
rs1000159 -- 74,912,276(+) A/G intron_variant
rs1000178471 -- 74,936,196(+) C/T intron_variant
rs1000277183 -- 74,921,458(+) G/T intron_variant
rs1000326536 -- 74,929,913(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01291 Gene

Variant ID Type Subtype PubMed ID
dgv3871n100 CNV gain 25217958
dgv3872n100 CNV gain 25217958
esv2751900 CNV gain 17911159
esv3575258 CNV gain 25503493
nsv1001495 CNV gain 25217958
nsv526995 CNV gain 19592680
nsv582217 CNV gain 21841781
nsv834262 CNV gain 17160897

Additional Variant Information for LINC01291 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01291

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01291 Gene

Disorders for LINC01291 Gene

Additional Disease Information for LINC01291

No disorders were found for LINC01291 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01291 Gene

Publications for LINC01291 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for LINC01291 Gene

Sources for LINC01291 Gene

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