Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LINC01290 Gene
Subcategory (RNA class) for LINC01290 Gene
lncRNA
Aliases for LINC01290 Gene
External Ids for LINC01290 Gene
- HGNC: 50356
- NCBI Entrez Gene: 106144584
- Ensembl: ENSG00000260468
Summaries for LINC01290 Gene
GeneCards Summary for LINC01290 Gene
LINC01290 (Long Intergenic Non-Protein Coding RNA 1290) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01290 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01290 Gene
Genomics for LINC01290 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01290 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J011219 | Enhancer | 0.4 | dbSUPER | 12.5 | -692.5 | -692536 | 1.7 | MCM3 TSC22D4 ZNF776 RUNX3 | HNRNPCP4 RMI2 RSL1D1-DT ENSG00000261560 COX6CP1 LINC01290 TNP2 PRM3 ENSG00000212228 PRM2 | |
| GH16J010520 | Enhancer | 1 | Ensembl ENCODE | 0.4 | +7.7 | 7740 | 1.3 | CHD2 CEBPA ELF1 KDM6A THAP11 FOXA2 MAFF SMAD4 SAP130 RXRA | EMP2 HSALNG0109527 HSALNG0109528 LINC01290 ATF7IP2 | |
| GH16J010521 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +5.7 | 5674 | 1.7 | ZNF217 CTCF CEBPB REST MAX TRIM22 SAP130 ZNF341 SMC3 RAD21 | HSALNG0109528 EMP2 HSALNG0109527 LINC01290 ATF7IP2 | |
| GH16J010514 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +13.3 | 13267 | 1.3 | CEBPA CTCF CEBPB REST FOXA2 TRIM22 MAFF SMAD4 RXRA ZBTB33 | EMP2 HSALNG0109527 piR-50444-141 LINC01290 ATF7IP2 | |
| GH16J010516 | Enhancer | 0.2 | Ensembl | 0.4 | +12.1 | 12101 | 0.2 | EMP2 HSALNG0109527 piR-50444-141 LINC01290 ATF7IP2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01290 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01290 Gene
Latest Assembly
- chr16:10,514,841-10,528,202
- (GRCh38/hg38)
- Size:
- 13,362 bases
- Orientation:
- Minus strand
Previous Assembly
- chr16:10,608,699-10,622,055
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 13,357 bases
- Orientation:
- Minus strand
- chr16:10,608,699-10,622,059
- (GRCh37/hg19 by Ensembl)
- Size:
- 13,361 bases
- Orientation:
- Minus strand
Genomic View for LINC01290 Gene
Genes around LINC01290 on UCSC Golden Path with GeneCards custom track
LINC01290 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16p13.13 by HGNC
- 16p13.13 by Entrez Gene
- 16p13.13 by Ensembl
LINC01290 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01290 Gene
Proteins for LINC01290 Gene
Post-translational modifications for LINC01290 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01290 Gene
Domains & Families for LINC01290 Gene
Gene Families for LINC01290 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01290 Gene
Function for LINC01290 Gene
Phenotypes From GWAS Catalog for LINC01290 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01290 Gene
Localization for LINC01290 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01290 Gene
Transcripts for LINC01290 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01290 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000544C1_9606 | lncRNA | 504 | 4 |
Ensembl: ENST00000566787 (view in UCSC) , LncBook: HSALNT0227620, LNCipedia: LINC01290:1, NONCODE: NONHSAT140510.2, |
| URS0000BC45FA_9606 | lncRNA | 497 | 1 |
RefSeq: NR_149081, |
| URS00008BC8D2_9606 | lncRNA | 399 | 3 |
LncBook: HSALNT0227622, LNCipedia: LINC01290:2, NONCODE: NONHSAT140511.2, |
| URS0001BE87C1_9606 | lncRNA | 502 | 1 |
LncBook: HSALNT0227620, |
| URS0001BDEAFD_9606 | lncRNA | 399 | 1 |
LncBook: HSALNT0227622, |
LINC01290 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01290 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01290 Gene
- GeneLoc Exon Structure for
- LINC01290
Expression for LINC01290 Gene
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01290 Gene
Orthologs for LINC01290 Gene
No data available for Orthologs for LINC01290 Gene
Paralogs for LINC01290 Gene
No data available for Paralogs for LINC01290 Gene
Variants for LINC01290 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01290 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01290
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01290 Gene
Disorders for LINC01290 Gene
Additional Disease Information for LINC01290
No disorders were found for LINC01290 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01290 Gene
Publications for LINC01290 Gene
- Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3
Products for LINC01290 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01290
- Origene Custom Protein Services for LINC01290
- Browse OriGene Inhibitory RNA Products For LINC01290
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01290
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01290
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01290
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01290
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01290
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01290
Sources for LINC01290 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB