Aliases for LINC01290 Gene

Data sources for LINC01290 Gene:

Subcategory (RNA class) for LINC01290 Gene

lncRNA

Aliases for LINC01290 Gene

External Ids for LINC01290 Gene

Summaries for LINC01290 Gene

GeneCards Summary for LINC01290 Gene

LINC01290 (Long Intergenic Non-Protein Coding RNA 1290) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01290 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01290 Gene

Genomics for LINC01290 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01290 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J011219 Enhancer 0.4 dbSUPER 12.5 -692.5 -692536 1.7 MCM3 TSC22D4 ZNF776 RUNX3 HNRNPCP4 RMI2 RSL1D1-DT ENSG00000261560 COX6CP1 LINC01290 TNP2 PRM3 ENSG00000212228 PRM2
GH16J010520 Enhancer 1 Ensembl ENCODE 0.4 +7.7 7740 1.3 CHD2 CEBPA ELF1 KDM6A THAP11 FOXA2 MAFF SMAD4 SAP130 RXRA EMP2 HSALNG0109527 HSALNG0109528 LINC01290 ATF7IP2
GH16J010521 Enhancer 0.9 Ensembl ENCODE 0.4 +5.7 5674 1.7 ZNF217 CTCF CEBPB REST MAX TRIM22 SAP130 ZNF341 SMC3 RAD21 HSALNG0109528 EMP2 HSALNG0109527 LINC01290 ATF7IP2
GH16J010514 Enhancer 0.9 Ensembl ENCODE 0.4 +13.3 13267 1.3 CEBPA CTCF CEBPB REST FOXA2 TRIM22 MAFF SMAD4 RXRA ZBTB33 EMP2 HSALNG0109527 piR-50444-141 LINC01290 ATF7IP2
GH16J010516 Enhancer 0.2 Ensembl 0.4 +12.1 12101 0.2 EMP2 HSALNG0109527 piR-50444-141 LINC01290 ATF7IP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01290 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01290 Gene

Latest Assembly
chr16:10,514,841-10,528,202
(GRCh38/hg38)
Size:
13,362 bases
Orientation:
Minus strand

Previous Assembly
chr16:10,608,699-10,622,055
(GRCh37/hg19 by Entrez Gene)
Size:
13,357 bases
Orientation:
Minus strand

chr16:10,608,699-10,622,059
(GRCh37/hg19 by Ensembl)
Size:
13,361 bases
Orientation:
Minus strand

Genomic View for LINC01290 Gene

Genes around LINC01290 on UCSC Golden Path with GeneCards custom track
LINC01290 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01290 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01290 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01290 Gene

Proteins for LINC01290 Gene

Post-translational modifications for LINC01290 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01290 Gene

Domains & Families for LINC01290 Gene

Gene Families for LINC01290 Gene

genes like me logo Genes that share domains with LINC01290: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01290 Gene

Function for LINC01290 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01290 Gene

Localization for LINC01290 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01290 Gene

Pathways & Interactions for LINC01290 Gene

PathCards logo

SuperPathways for LINC01290 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01290 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01290 Gene

Drugs & Compounds for LINC01290 Gene

No Compound Related Data Available

Transcripts for LINC01290 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01290 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000544C1_9606 lncRNA 504 4

Ensembl: ENST00000566787 (view in UCSC) ,

LncBook: HSALNT0227620,

LNCipedia: LINC01290:1,

NONCODE: NONHSAT140510.2,

URS0000BC45FA_9606 lncRNA 497 1

RefSeq: NR_149081,

URS00008BC8D2_9606 lncRNA 399 3

LncBook: HSALNT0227622,

LNCipedia: LINC01290:2,

NONCODE: NONHSAT140511.2,

URS0001BE87C1_9606 lncRNA 502 1

LncBook: HSALNT0227620,

URS0001BDEAFD_9606 lncRNA 399 1

LncBook: HSALNT0227622,

LINC01290 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01290 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01290 Gene

No ASD Table

Relevant External Links for LINC01290 Gene

GeneLoc Exon Structure for
LINC01290

Expression for LINC01290 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01290 Gene

genes like me logo Genes that share expression patterns with LINC01290: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01290 Gene

Orthologs for LINC01290 Gene

Evolution for LINC01290 Gene

ENSEMBL:
Gene Tree for LINC01290 (if available)
TreeFam:
Gene Tree for LINC01290 (if available)

No data available for Orthologs for LINC01290 Gene

Paralogs for LINC01290 Gene

No data available for Paralogs for LINC01290 Gene

Variants for LINC01290 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01290 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01290 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01290

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01290 Gene

Disorders for LINC01290 Gene

Additional Disease Information for LINC01290

No disorders were found for LINC01290 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01290 Gene

Publications for LINC01290 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for LINC01290 Gene

Sources for LINC01290 Gene