Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01290 Gene

Subcategory (RNA class) for LINC01290 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01290 Gene

  • Long Intergenic Non-Protein Coding RNA 1290 2 3 5

External Ids for LINC01290 Gene

Summaries for LINC01290 Gene

GeneCards Summary for LINC01290 Gene

LINC01290 (Long Intergenic Non-Protein Coding RNA 1290) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01290 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01290 Gene

Genomics for LINC01290 Gene

GeneHancer (GH) Regulatory Elements for LINC01290 Gene

Promoters and enhancers for LINC01290 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J011219 Enhancer 0.5 dbSUPER 12.5 -692.5 -692536 1.7 MCM3 TSC22D4 ZNF662 RUNX3 GC16M011199 ENSG00000261560 LOC105371084 HNRNPCP4 COX6CP1 RMI2 LINC01290 TNP2 ENSG00000212228 PRM3
GH16J010509 Enhancer 1.1 Ensembl ENCODE 0.4 +18.5 18485 0.2 HDGF FOXA2 ARID4B IRF4 YY1 ARID2 ZNF207 ZNF143 DEK NFKBIZ EMP2 RNU6-633P LINC01290 GC16P010485
GH16J010521 Enhancer 1 Ensembl ENCODE 0.4 +6.3 6301 0.2 ELF3 CTCF USF1 SAP130 RB1 MAX CEBPG DMAP1 RAD21 TEAD3 EMP2 LINC01290 RNU6-633P GC16P010485
GH16J010514 Enhancer 1 Ensembl ENCODE 0.4 +13.4 13391 1.1 FOXA2 DNMT3B RAD21 RARA YY1 EGR1 ZNF143 ATF7 ZNF654 RXRA EMP2 LINC01290 RNU6-633P GC16P010485
GH16J010520 Enhancer 0.9 ENCODE 0.4 +7.6 7553 0.2 FOXA2 ARID4B YY1 RXRA SP5 NFYC REST PPARG KAT8 NFIL3 LINC01290 RNU6-633P GC16P010485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01290 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01290 Gene

Genomic Locations for LINC01290 Gene
chr16:10,514,842-10,528,202
(GRCh38/hg38)
Size:
13,361 bases
Orientation:
Minus strand
chr16:10,608,699-10,622,059
(GRCh37/hg19)
Size:
13,361 bases
Orientation:
Minus strand

Genomic View for LINC01290 Gene

Genes around LINC01290 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01290 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01290 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01290 Gene

Proteins for LINC01290 Gene

Post-translational modifications for LINC01290 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01290 Gene

Domains & Families for LINC01290 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01290 Gene

Function for LINC01290 Gene

Phenotypes From GWAS Catalog for LINC01290 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01290 Gene

Localization for LINC01290 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01290 Gene

Pathways & Interactions for LINC01290 Gene

SuperPathways for LINC01290 Gene

No Data Available

Interacting Proteins for LINC01290 Gene

Gene Ontology (GO) - Biological Process for LINC01290 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01290 Gene

Drugs & Compounds for LINC01290 Gene

No Compound Related Data Available

Transcripts for LINC01290 Gene

mRNA/cDNA for LINC01290 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01290 Gene

No ASD Table

Relevant External Links for LINC01290 Gene

GeneLoc Exon Structure for
LINC01290
ECgene alternative splicing isoforms for
LINC01290

Expression for LINC01290 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01290 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01290 Gene:

LINC01290
genes like me logo Genes that share expression patterns with LINC01290: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01290 Gene

Orthologs for LINC01290 Gene

Evolution for LINC01290 Gene

ENSEMBL:
Gene Tree for LINC01290 (if available)
TreeFam:
Gene Tree for LINC01290 (if available)

No data available for Orthologs for LINC01290 Gene

Paralogs for LINC01290 Gene

No data available for Paralogs for LINC01290 Gene

Variants for LINC01290 Gene

Additional Variant Information for LINC01290 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01290

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01290 Gene

Disorders for LINC01290 Gene

No disorders were found for LINC01290 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01290 Gene

Publications for LINC01290 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for LINC01290 Gene

Sources for LINC01290 Gene

Content
Loading form....