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Aliases for LINC01288 Gene

Subcategory (RNA class) for LINC01288 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01288 Gene

  • Long Intergenic Non-Protein Coding RNA 1288 2 3 5
  • TCONS_00014671 3

External Ids for LINC01288 Gene

Summaries for LINC01288 Gene

GeneCards Summary for LINC01288 Gene

LINC01288 (Long Intergenic Non-Protein Coding RNA 1288) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01288 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01288 Gene

Genomics for LINC01288 Gene

GeneHancer (GH) Regulatory Elements for LINC01288 Gene

Promoters and enhancers for LINC01288 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J034837 Enhancer 0.2 ENCODE 0.2 +54.1 54079 1.3 RPL21P80 LINC01288
GH08J034859 Enhancer 0.2 ENCODE 0.2 +76.6 76597 1.2 RPL21P80 LINC01288
GH08J034846 Enhancer 0.2 ENCODE 0.2 +63.1 63117 0.2 RPL21P80 LINC01288
GH08J034665 Enhancer 0.3 ENCODE 0.1 -117.6 -117573 0.7 POLR2A GC08M034603 LINC01288
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01288 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01288 Gene

Genomic Locations for LINC01288 Gene
chr8:34,783,921-34,864,798
(GRCh38/hg38)
Size:
80,878 bases
Orientation:
Plus strand
chr8:34,641,570-34,722,316
(GRCh37/hg19)
Size:
80,747 bases
Orientation:
Plus strand

Genomic View for LINC01288 Gene

Genes around LINC01288 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01288 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01288 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01288 Gene

Proteins for LINC01288 Gene

Post-translational modifications for LINC01288 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01288 Gene

Domains & Families for LINC01288 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01288 Gene

Function for LINC01288 Gene

Phenotypes From GWAS Catalog for LINC01288 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01288 Gene

Localization for LINC01288 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01288 Gene

Pathways & Interactions for LINC01288 Gene

SuperPathways for LINC01288 Gene

No Data Available

Interacting Proteins for LINC01288 Gene

Gene Ontology (GO) - Biological Process for LINC01288 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01288 Gene

Drugs & Compounds for LINC01288 Gene

No Compound Related Data Available

Transcripts for LINC01288 Gene

mRNA/cDNA for LINC01288 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01288 Gene

No ASD Table

Relevant External Links for LINC01288 Gene

GeneLoc Exon Structure for
LINC01288
ECgene alternative splicing isoforms for
LINC01288

Expression for LINC01288 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01288 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01288 Gene:

LINC01288
genes like me logo Genes that share expression patterns with LINC01288: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01288 Gene

Orthologs for LINC01288 Gene

Evolution for LINC01288 Gene

ENSEMBL:
Gene Tree for LINC01288 (if available)
TreeFam:
Gene Tree for LINC01288 (if available)

No data available for Orthologs for LINC01288 Gene

Paralogs for LINC01288 Gene

No data available for Paralogs for LINC01288 Gene

Variants for LINC01288 Gene

Sequence variations from dbSNP and Humsavar for LINC01288 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000090051 -- 34,810,821(+) /G intron_variant
rs1000094115 -- 34,850,536(+) T/TT intron_variant
rs1000102706 -- 34,803,802(+) G/A intron_variant
rs1000114042 -- 34,862,126(+) C/A/T intron_variant
rs1000122991 -- 34,805,340(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01288 Gene

Variant ID Type Subtype PubMed ID
nsv831283 CNV gain 17160897
nsv6148 CNV deletion 18451855
nsv517906 CNV gain 19592680
esv990287 CNV deletion 20482838
esv3616867 CNV gain 21293372
esv3543347 CNV deletion 23714750
esv2736871 CNV deletion 23290073
esv2736870 CNV deletion 23290073
dgv12088n54 CNV loss 21841781

Additional Variant Information for LINC01288 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01288

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01288 Gene

Disorders for LINC01288 Gene

Additional Disease Information for LINC01288

No disorders were found for LINC01288 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01288 Gene

Publications for LINC01288 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01288 Gene

Sources for LINC01288 Gene

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