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Aliases for LINC01285 Gene

Subcategory (RNA class) for LINC01285 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01285 Gene

  • Long Intergenic Non-Protein Coding RNA 1285 2 3 5

External Ids for LINC01285 Gene

Summaries for LINC01285 Gene

GeneCards Summary for LINC01285 Gene

LINC01285 (Long Intergenic Non-Protein Coding RNA 1285) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01285 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01285 Gene

Genomics for LINC01285 Gene

GeneHancer (GH) Regulatory Elements for LINC01285 Gene

Promoters and enhancers for LINC01285 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ118839 Promoter/Enhancer 1.4 Ensembl ENCODE 656.4 +0.1 112 1.3 ELF3 CLOCK RB1 MLX ARID4B SIN3A DMAP1 RAD21 RARA YY1 LINC01285 KIAA1210 LOC159007
GH0XJ118823 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.4 -15.7 -15719 0.8 PKNOX1 ATF1 ZNF335 GLIS2 EGR1 CREM EGR2 SP3 NFYC ZNF398 ZCCHC12 IL13RA1 LINC01285
GH0XJ118825 Promoter 0.7 EPDnew 0.4 -14.3 -14340 0.1 NFIB EZH2 ZCCHC12 LINC01285
GH0XJ118871 Enhancer 0.6 ENCODE 0.3 +32.9 32852 1.1 RXRA MAX RAD21 YY1 SP1 JUND ATF3 HNF4A ZBTB33 LOC159007 LINC01285
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01285 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01285 Gene

Genomic Locations for LINC01285 Gene
chrX:118,839,554-118,919,669
(GRCh38/hg38)
Size:
80,116 bases
Orientation:
Plus strand
chrX:117,973,519-118,015,978
(GRCh37/hg19)
Size:
42,460 bases
Orientation:
Plus strand

Genomic View for LINC01285 Gene

Genes around LINC01285 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01285 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01285 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01285 Gene

Proteins for LINC01285 Gene

Post-translational modifications for LINC01285 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01285 Gene

Domains & Families for LINC01285 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01285 Gene

Function for LINC01285 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01285 Gene

Localization for LINC01285 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01285 Gene

Pathways & Interactions for LINC01285 Gene

SuperPathways for LINC01285 Gene

No Data Available

Interacting Proteins for LINC01285 Gene

Gene Ontology (GO) - Biological Process for LINC01285 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01285 Gene

Drugs & Compounds for LINC01285 Gene

No Compound Related Data Available

Transcripts for LINC01285 Gene

mRNA/cDNA for LINC01285 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01285 Gene

No ASD Table

Relevant External Links for LINC01285 Gene

GeneLoc Exon Structure for
LINC01285
ECgene alternative splicing isoforms for
LINC01285

Expression for LINC01285 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01285 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01285 Gene:

LINC01285
genes like me logo Genes that share expression patterns with LINC01285: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01285 Gene

Orthologs for LINC01285 Gene

Evolution for LINC01285 Gene

ENSEMBL:
Gene Tree for LINC01285 (if available)
TreeFam:
Gene Tree for LINC01285 (if available)

No data available for Orthologs for LINC01285 Gene

Paralogs for LINC01285 Gene

No data available for Paralogs for LINC01285 Gene

Variants for LINC01285 Gene

Sequence variations from dbSNP and Humsavar for LINC01285 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000402783 -- 118,882,196(+) T/C downstream_transcript_variant
rs1000477376 -- 118,863,228(+) A/G intron_variant
rs1000798810 -- 118,851,100(+) T/A intron_variant
rs1000974887 -- 118,858,514(+) G/A intron_variant
rs1000987477 -- 118,876,449(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01285 Gene

Variant ID Type Subtype PubMed ID
dgv527n21 CNV gain 19592680
esv2672181 CNV deletion 23128226

Additional Variant Information for LINC01285 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01285

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01285 Gene

Disorders for LINC01285 Gene

Additional Disease Information for LINC01285

No disorders were found for LINC01285 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01285 Gene

Publications for LINC01285 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01285 Gene

Sources for LINC01285 Gene

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