Aliases for LINC01282 Gene

Subcategory (RNA class) for LINC01282 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01282 Gene

  • Long Intergenic Non-Protein Coding RNA 1282 2 3 5
  • LINC01282 2 168
  • NONHSAG054259 92

External Ids for LINC01282 Gene

Summaries for LINC01282 Gene

GeneCards Summary for LINC01282 Gene

LINC01282 (Long Intergenic Non-Protein Coding RNA 1282) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01282 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01282 Gene

Genomics for LINC01282 Gene

GeneHancer (GH) Regulatory Elements for LINC01282 Gene

Promoters and enhancers for LINC01282 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ039417 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.3 -27.4 -27350 2.9 RFX1 NR2F2 RAD21 RXRA HNF4A GATA2 SP1 LINC01281 piR-31199-388 LINC01283 LINC01282
GH0XJ039399 Enhancer 0.5 Ensembl 0.4 -7.2 -7194 1.6 REST ZNF398 ZNF366 ZNF544 ZNF512 FOXA1 PRDM1 IKZF1 ENSG00000235806 LINC01282 piR-31199-388 LINC01283
GH0XJ039397 Enhancer 0.5 FANTOM5 Ensembl 0.4 -6.1 -6081 0.6 ZNF512 LINC01282 piR-31199-388
GH0XJ039416 Enhancer 0.4 Ensembl 0.4 -24.9 -24894 0.2 MEF2B EBF1 BHLHE40 piR-31199-388 LINC01283 LINC01282
GH0XJ039366 Enhancer 0.3 Ensembl ENCODE 0.4 +24.2 24179 2 LOC105373176 LINC01282 LINC01281
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01282 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01282 Gene

Genomic Locations for LINC01282 Gene
chrX:39,367,285-39,391,807
(GRCh38/hg38)
Size:
24,523 bases
Orientation:
Minus strand
chrX:39,226,539-39,251,028
(GRCh37/hg19)
Size:
24,490 bases
Orientation:
Minus strand

Genomic View for LINC01282 Gene

Genes around LINC01282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01282 Gene

Proteins for LINC01282 Gene

Post-translational modifications for LINC01282 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01282 Gene

Domains & Families for LINC01282 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01282 Gene

Function for LINC01282 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01282 Gene

Localization for LINC01282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01282 Gene

Pathways & Interactions for LINC01282 Gene

PathCards logo

SuperPathways for LINC01282 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01282 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01282 Gene

Drugs & Compounds for LINC01282 Gene

No Compound Related Data Available

Transcripts for LINC01282 Gene

mRNA/cDNA for LINC01282 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01282 Gene

No ASD Table

Relevant External Links for LINC01282 Gene

GeneLoc Exon Structure for
LINC01282

Expression for LINC01282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01282 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01282

genes like me logo Genes that share expression patterns with LINC01282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01282 Gene

Orthologs for LINC01282 Gene

Evolution for LINC01282 Gene

ENSEMBL:
Gene Tree for LINC01282 (if available)
TreeFam:
Gene Tree for LINC01282 (if available)

No data available for Orthologs for LINC01282 Gene

Paralogs for LINC01282 Gene

No data available for Paralogs for LINC01282 Gene

Variants for LINC01282 Gene

Additional dbSNP identifiers (rs#s) for LINC01282 Gene

Additional Variant Information for LINC01282 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01282

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01282 Gene

Disorders for LINC01282 Gene

Additional Disease Information for LINC01282

No disorders were found for LINC01282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01282 Gene

Publications for LINC01282 Gene

No publications were found for LINC01282 Gene.

No data available for Mastermind for LINC01282 Gene

Products for LINC01282 Gene

Sources for LINC01282 Gene