Aliases for LINC01281 Gene

Subcategory (RNA class) for LINC01281 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01281 Gene

  • Long Intergenic Non-Protein Coding RNA 1281 2 3 5
  • LINC01281 2 5 165
  • NONHSAG054258.2 91
  • HSALNG0137350 164

External Ids for LINC01281 Gene

Summaries for LINC01281 Gene

GeneCards Summary for LINC01281 Gene

LINC01281 (Long Intergenic Non-Protein Coding RNA 1281) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01281 include Laryngeal Benign Neoplasm.

Additional gene information for LINC01281 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01281 Gene

Genomics for LINC01281 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01281 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ039324 Promoter/Enhancer 0.5 EPDnew Ensembl 600.7 -0.1 -57 1 LINC01281 LOC105373176 MID1IP1 LOC107985687
GH0XJ039328 Enhancer 0.2 Ensembl 600.7 -1.4 -1357 0.8 LINC01281 LOC105373176 MID1IP1 LOC107985687
GH0XJ039434 Promoter/Enhancer 1.1 EPDnew FANTOM5 Ensembl ENCODE 5.9 -108.5 -108456 3 ZNF585B ZMYM3 LINC01283 LINC01281 HSALNG0137357 MID1IP1 LOC107985687
GH0XJ039417 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 5.9 -91.7 -91713 2.9 SP1 RFX1 NR2F2 RAD21 HNF4A RXRA GATA2 LINC01281 piR-31199-388 LINC01283 LINC01282 MID1IP1 LOC107985687
GH0XJ039439 Enhancer 0.8 Ensembl ENCODE 5.9 -113.7 -113657 3.4 CTCF RELB RUNX3 ATF2 IKZF1 IRF2 TAL1 ATF3 PRDM10 TRIM28 LINC01281 LINC01283 HSALNG0137357 MID1IP1 LOC107985687
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01281 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01281 Gene

Genomic Locations for LINC01281 Gene
chrX:39,304,887-39,327,444
(GRCh38/hg38)
Size:
22,558 bases
Orientation:
Minus strand
chrX:39,164,210-39,186,616
(GRCh37/hg19)
Size:
22,407 bases
Orientation:
Minus strand

Genomic View for LINC01281 Gene

Genes around LINC01281 on UCSC Golden Path with GeneCards custom track
LINC01281 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01281 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01281 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01281 Gene

Proteins for LINC01281 Gene

Post-translational modifications for LINC01281 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01281 Gene

Domains & Families for LINC01281 Gene

Gene Families for LINC01281 Gene

genes like me logo Genes that share domains with LINC01281: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01281 Gene

Function for LINC01281 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01281 Gene

Localization for LINC01281 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01281 Gene

Pathways & Interactions for LINC01281 Gene

PathCards logo

SuperPathways for LINC01281 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01281 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01281 Gene

Drugs & Compounds for LINC01281 Gene

No Compound Related Data Available

Transcripts for LINC01281 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01281 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005DB5CD_9606 lncRNA 1773 5

HGNC: 50337,

RefSeq: NR_038968,

Ensembl: ENST00000448597 (view in UCSC) ,

LNCipedia: LINC01281:1, LINC01281:10,

NONCODE: NONHSAT136667.2,

URS00000138B5_9606 lncRNA 673 3

Ensembl: ENST00000429281 (view in UCSC) ,

LNCipedia: LINC01281:2,

NONCODE: NONHSAT136668.2,

URS0000EEFE0A_9606 lncRNA 1403 1

Ensembl: ENST00000655040 (view in UCSC) ,

URS00009B38E6_9606 lncRNA 2386 2

LncBook: HSALNT0281579,

NONCODE: NONHSAT223278.1,

URS00009AFC3C_9606 lncRNA 1773 2

LncBook: HSALNT0281587,

NONCODE: NONHSAT223279.1,

LINC01281 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01281 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01281 Gene

No ASD Table

Relevant External Links for LINC01281 Gene

GeneLoc Exon Structure for
LINC01281

Expression for LINC01281 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01281 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01281

genes like me logo Genes that share expression patterns with LINC01281: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01281 Gene

Orthologs for LINC01281 Gene

Evolution for LINC01281 Gene

ENSEMBL:
Gene Tree for LINC01281 (if available)
TreeFam:
Gene Tree for LINC01281 (if available)

No data available for Orthologs for LINC01281 Gene

Paralogs for LINC01281 Gene

No data available for Paralogs for LINC01281 Gene

Variants for LINC01281 Gene

Additional dbSNP identifiers (rs#s) for LINC01281 Gene

Additional Variant Information for LINC01281 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01281

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01281 Gene

Disorders for LINC01281 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01281 Gene - From: DISEASES

Disorder Aliases PubMed IDs
laryngeal benign neoplasm
  • laryngeal tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01281: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01281 Gene

Publications for LINC01281 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01281 Gene

Sources for LINC01281 Gene