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Aliases for LINC01280 Gene

Subcategory (RNA class) for LINC01280 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01280 Gene

  • Long Intergenic Non-Protein Coding RNA 1280 2 3 5

External Ids for LINC01280 Gene

Summaries for LINC01280 Gene

GeneCards Summary for LINC01280 Gene

LINC01280 (Long Intergenic Non-Protein Coding RNA 1280) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01280 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01280 Gene

Genomics for LINC01280 Gene

GeneHancer (GH) Regulatory Elements for LINC01280 Gene

Promoters and enhancers for LINC01280 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I216606 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.1 55 1.1 HDGF PKNOX1 ATF1 MAX ETS1 POLR2A EGR1 PHF20 VEZF1 IKZF2 LINC01280 ENSG00000225794
GH02I216649 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 -45.5 -45516 6.2 ELF3 RAD21 THRB RARA ZSCAN5C SCRT2 ATF7 FOS RXRA ELF1 LINC01280 ENSG00000225794 IGFBP5 ENSG00000236886 IGFBP2
GH02I216565 Enhancer 0.5 dbSUPER 12.3 +41.0 40970 1.1 SOX13 FOXA2 FOXA3 ETV4 ARID4B BCL6 TEAD3 IGFBP2 ENSG00000225794 LINC01280 LOC105373871 LOC101928180 RPL37A
GH02I216562 Enhancer 0.2 dbSUPER 11.9 +43.9 43938 1.3 IGFBP2 LINC01280 ENSG00000225794 LOC105373871 LOC101928180 RPL37A
GH02I216602 Enhancer 0.6 dbSUPER 0.8 +4.0 4043 1.5 PKNOX1 MAZ ZNF398 TBX3 ZNF629 WT1 PRDM1 PRDM4 SP7 ENSG00000225794 LINC01280 LOC105373871
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01280 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01280 Gene

Genomic Locations for LINC01280 Gene
chr2:216,589,993-216,606,938
(GRCh38/hg38)
Size:
16,946 bases
Orientation:
Minus strand
chr2:217,455,149-217,471,661
(GRCh37/hg19)

Genomic View for LINC01280 Gene

Genes around LINC01280 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01280 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01280 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01280 Gene

Proteins for LINC01280 Gene

Post-translational modifications for LINC01280 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01280 Gene

Domains & Families for LINC01280 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01280 Gene

Function for LINC01280 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01280 Gene

Localization for LINC01280 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01280 Gene

Pathways & Interactions for LINC01280 Gene

SuperPathways for LINC01280 Gene

No Data Available

Interacting Proteins for LINC01280 Gene

Gene Ontology (GO) - Biological Process for LINC01280 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01280 Gene

Drugs & Compounds for LINC01280 Gene

No Compound Related Data Available

Transcripts for LINC01280 Gene

mRNA/cDNA for LINC01280 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01280 Gene

No ASD Table

Relevant External Links for LINC01280 Gene

GeneLoc Exon Structure for
LINC01280
ECgene alternative splicing isoforms for
LINC01280

Expression for LINC01280 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01280 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01280 Gene:

LINC01280
genes like me logo Genes that share expression patterns with LINC01280: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01280 Gene

Orthologs for LINC01280 Gene

Evolution for LINC01280 Gene

ENSEMBL:
Gene Tree for LINC01280 (if available)
TreeFam:
Gene Tree for LINC01280 (if available)

No data available for Orthologs for LINC01280 Gene

Paralogs for LINC01280 Gene

No data available for Paralogs for LINC01280 Gene

Variants for LINC01280 Gene

Sequence variations from dbSNP and Humsavar for LINC01280 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000139176 -- 216,599,726(-) G/T intron_variant
rs1000145266 -- 216,600,166(-) C/A/T intron_variant
rs1000190281 -- 216,599,554(-) G/A intron_variant
rs1000249668 -- 216,593,258(-) A/G intron_variant
rs1000705000 -- 216,593,050(-) C/T intron_variant

Additional Variant Information for LINC01280 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01280

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01280 Gene

Disorders for LINC01280 Gene

Additional Disease Information for LINC01280

No disorders were found for LINC01280 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01280 Gene

Publications for LINC01280 Gene

No publications were found for LINC01280 Gene.

Products for LINC01280 Gene

Sources for LINC01280 Gene

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