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Aliases for LINC01278 Gene

Subcategory (RNA class) for LINC01278 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01278 Gene

  • Long Intergenic Non-Protein Coding RNA 1278 2 3 5

External Ids for LINC01278 Gene

Summaries for LINC01278 Gene

GeneCards Summary for LINC01278 Gene

LINC01278 (Long Intergenic Non-Protein Coding RNA 1278) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01278 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01278 Gene

Genomics for LINC01278 Gene

GeneHancer (GH) Regulatory Elements for LINC01278 Gene

Promoters and enhancers for LINC01278 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI063559 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 +0.3 270 2.8 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 RUNX3 ZNF518A KAT8 LINC01278 PIR59801
GH0XI063349 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.1 +210.6 210570 3 PKNOX1 ATF1 FOXA2 MLX SIN3A FEZF1 ZNF48 GLIS2 SP3 SP5 SPIN4 SPIN4-AS1 GC0XP063338 LINC01278
GH0XI063503 Enhancer 0.6 Ensembl ENCODE 0.2 +57.3 57283 1.2 SP1 PRDM1 LINC01278 PIR59801
GH0XI063513 Enhancer 0.5 Ensembl ENCODE 0.2 +46.6 46622 1.2 YY1 LINC01278 PIR59801
GH0XI063656 Enhancer 0.5 Ensembl ENCODE 0.2 -96.8 -96789 3.2 JUND ARHGEF9-IT1 LINC01278 ARHGEF9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01278 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01278 Gene

Genomic Locations for LINC01278 Gene
chrX:63,343,227-63,561,071
(GRCh38/hg38)
Size:
217,845 bases
Orientation:
Minus strand
chrX:62,563,106-62,780,951
(GRCh37/hg19)

Genomic View for LINC01278 Gene

Genes around LINC01278 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01278 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01278 Gene

Proteins for LINC01278 Gene

Post-translational modifications for LINC01278 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01278 Gene

Domains & Families for LINC01278 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01278 Gene

Function for LINC01278 Gene

Phenotypes From GWAS Catalog for LINC01278 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01278 Gene

Localization for LINC01278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01278 Gene

Pathways & Interactions for LINC01278 Gene

SuperPathways for LINC01278 Gene

No Data Available

Interacting Proteins for LINC01278 Gene

Gene Ontology (GO) - Biological Process for LINC01278 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01278 Gene

Drugs & Compounds for LINC01278 Gene

No Compound Related Data Available

Transcripts for LINC01278 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01278 Gene

No ASD Table

Relevant External Links for LINC01278 Gene

GeneLoc Exon Structure for
LINC01278
ECgene alternative splicing isoforms for
LINC01278

Expression for LINC01278 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01278 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01278 Gene:

LINC01278
genes like me logo Genes that share expression patterns with LINC01278: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01278 Gene

Orthologs for LINC01278 Gene

Evolution for LINC01278 Gene

ENSEMBL:
Gene Tree for LINC01278 (if available)
TreeFam:
Gene Tree for LINC01278 (if available)

No data available for Orthologs for LINC01278 Gene

Paralogs for LINC01278 Gene

No data available for Paralogs for LINC01278 Gene

Variants for LINC01278 Gene

Sequence variations from dbSNP and Humsavar for LINC01278 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs10047001 -- 63,507,212(-) C/T intron_variant
rs111245393 -- 63,485,803(-) T/C intron_variant
rs111246956 -- 63,432,591(-) G/A/T intron_variant
rs111269649 -- 63,562,600(-) T/A/G upstream_transcript_variant
rs111277389 -- 63,501,384(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01278 Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER inversion 17803354

Additional Variant Information for LINC01278 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01278

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01278 Gene

Disorders for LINC01278 Gene

Additional Disease Information for LINC01278

No disorders were found for LINC01278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01278 Gene

Publications for LINC01278 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01278 Gene

Sources for LINC01278 Gene

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