Aliases for LINC01273 Gene

Data sources for LINC01273 Gene:

Subcategory (RNA class) for LINC01273 Gene

lncRNA

Aliases for LINC01273 Gene

External Ids for LINC01273 Gene

Summaries for LINC01273 Gene

GeneCards Summary for LINC01273 Gene

LINC01273 (Long Intergenic Non-Protein Coding RNA 1273) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01273 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01273 Gene

Genomics for LINC01273 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01273 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01273 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01273 Gene

Latest Assembly
chr20:50,171,809-50,176,676
(GRCh38/hg38)
Size:
4,868 bases
Orientation:
Plus strand

Previous Assembly
chr20:48,789,107-48,793,208
(GRCh37/hg19 by Entrez Gene)
Size:
4,102 bases
Orientation:
Plus strand

chr20:48,789,087-48,793,096
(GRCh37/hg19 by Ensembl)
Size:
4,010 bases
Orientation:
Plus strand

Genomic View for LINC01273 Gene

Genes around LINC01273 on UCSC Golden Path with GeneCards custom track
LINC01273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01273 Gene

Proteins for LINC01273 Gene

Post-translational modifications for LINC01273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01273 Gene

Domains & Families for LINC01273 Gene

Gene Families for LINC01273 Gene

genes like me logo Genes that share domains with LINC01273: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01273 Gene

Function for LINC01273 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01273 Gene

Localization for LINC01273 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01273 Gene

Pathways & Interactions for LINC01273 Gene

PathCards logo

SuperPathways for LINC01273 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01273 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01273 Gene

Drugs & Compounds for LINC01273 Gene

No Compound Related Data Available

Transcripts for LINC01273 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01273 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BD89_9606 lncRNA 705 2

RefSeq: NR_109943,

LNCipedia: LINC01273:11,

URS0000EEB6B9_9606 lncRNA 1002 1

Ensembl: ENST00000668708 (view in UCSC) ,

URS0000EF4FAC_9606 lncRNA 977 1

Ensembl: ENST00000659473 (view in UCSC) ,

URS0000EF19D7_9606 lncRNA 909 1

Ensembl: ENST00000670659 (view in UCSC) ,

URS0000EF1255_9606 lncRNA 864 1

Ensembl: ENST00000665536 (view in UCSC) ,

LINC01273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01273 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01273 Gene

No ASD Table

Relevant External Links for LINC01273 Gene

GeneLoc Exon Structure for
LINC01273

Expression for LINC01273 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01273 Gene

genes like me logo Genes that share expression patterns with LINC01273: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01273 Gene

Orthologs for LINC01273 Gene

Evolution for LINC01273 Gene

ENSEMBL:
Gene Tree for LINC01273 (if available)
TreeFam:
Gene Tree for LINC01273 (if available)

No data available for Orthologs for LINC01273 Gene

Paralogs for LINC01273 Gene

No data available for Paralogs for LINC01273 Gene

Variants for LINC01273 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01273 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01273 Gene

Variant ID Type Subtype PubMed ID
esv2762081 CNV gain 21179565
esv34129 CNV loss 18971310
nsv1061982 CNV loss 25217958

Additional Variant Information for LINC01273 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01273

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01273 Gene

Disorders for LINC01273 Gene

Additional Disease Information for LINC01273

No disorders were found for LINC01273 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01273 Gene

Publications for LINC01273 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

No data available for Mastermind for LINC01273 Gene

Products for LINC01273 Gene

Sources for LINC01273 Gene