LINC01271 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1271

GC20M050310
GIFtS:
10

Aliases for LINC01271 Gene

Subcategory (RNA class) for LINC01271 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01271 Gene

  • Long Intergenic Non-Protein Coding RNA 1271 2 3 5
  • LINC01271 2 168
  • HSALNG0130754 167
  • NONHSAG032004 92
  • NONHSAG032002 92

External Ids for LINC01271 Gene

Summaries for LINC01271 Gene

GeneCards Summary for LINC01271 Gene

LINC01271 (Long Intergenic Non-Protein Coding RNA 1271) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01271 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01271 Gene

Genomics for LINC01271 Gene

GeneHancer (GH) Regulatory Elements for LINC01271 Gene

Promoters and enhancers for LINC01271 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J050320 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 500.7 +0.2 235 3.2 EP300 FOXK2 TCF12 NRF1 BCLAF1 JUND PHF8 FOS ZFX ZIC2 LINC01271 ADNP ENSG00000232043 PTPN1 DPM1 MIR645 PSMD10P1 LINC01270 lnc-TMEM189-6 lnc-CEBPB-6
GH20J050301 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.4 13440 12.5 EP300 FOXK2 ZNF217 TCF12 USF1 POLR2G NCOR1 FOS ZIC2 REST CEBPB PTPN1 SLC9A8 LINC01270 SNAI1 ADNP DPM1 MIR645 ENSG00000232043 TMEM189
GH20J050319 Promoter/Enhancer 0.9 Ensembl dbSUPER 0.7 +2.3 2309 0.6 EGR1 VEZF1 PRDM10 ZFP36 TEAD4 KLF16 EGR2 POLR2A JUND EP300 ENSG00000232043 MIR645 PTPN1 LINC01271 lnc-CEBPB-6 LINC01270
GH20J050314 Enhancer 0.7 Ensembl dbSUPER 0.4 +6.5 6509 0.6 ZNF184 ZNF664 MAFK MAFF ZNF133 HDGF ZNF140 ENSG00000232043 MIR645 LINC01270 LINC01271 lnc-CEBPB-6
GH20J050315 Enhancer 0.3 Ensembl dbSUPER 0.4 +5.7 5709 0.2 ENSG00000232043 MIR645 LINC01271 lnc-CEBPB-6 LINC01270
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01271 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01271 Gene

Genomic Locations for LINC01271 Gene
chr20:50,299,876-50,321,410
(GRCh38/hg38)
Size:
21,535 bases
Orientation:
Minus strand
chr20:48,927,248-48,937,879
(GRCh37/hg19)
Size:
10,632 bases
Orientation:
Minus strand

Genomic View for LINC01271 Gene

Genes around LINC01271 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01271 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01271 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01271 Gene

Proteins for LINC01271 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01271 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01271 Gene

Domains & Families for LINC01271 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01271 Gene

Function for LINC01271 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01271 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01271 Gene

Localization for LINC01271 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01271 Gene

Pathways & Interactions for LINC01271 Gene

PathCards logo

SuperPathways for LINC01271 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01271 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01271 Gene

Drugs & Compounds for LINC01271 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01271 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01271 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01271 Gene

No ASD Table

Relevant External Links for LINC01271 Gene

GeneLoc Exon Structure for
LINC01271

Expression for LINC01271 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01271 Gene

mRNA expression in normal human tissues for LINC01271 Gene
mRNA expression by GTEx for LINC01271 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01271

genes like me logo Genes that share expression patterns with LINC01271: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01271 Gene

Orthologs for LINC01271 Gene

Evolution for LINC01271 Gene

ENSEMBL:
Gene Tree for LINC01271 (if available)
TreeFam:
Gene Tree for LINC01271 (if available)

No data available for Orthologs for LINC01271 Gene

Paralogs for LINC01271 Gene

No data available for Paralogs for LINC01271 Gene

Variants for LINC01271 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01271 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01271 Gene

Variant ID Type Subtype PubMed ID
esv2722501 CNV deletion 23290073
esv3350249 CNV insertion 20981092
nsv1061982 CNV loss 25217958

Additional Variant Information for LINC01271 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01271

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01271 Gene

Disorders for LINC01271 Gene

Additional Disease Information for LINC01271

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01271 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01271 Gene

Publications for LINC01271 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

ExternalLinks

View latest publications for LINC01271 gene in Mastermind

Products for LINC01271 Gene

Sources for LINC01271 Gene