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LINC01271 (Long Intergenic Non-Protein Coding RNA 1271) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH20J050320 | Promoter/Enhancer | 1.8 | EPDnew Ensembl ENCODE dbSUPER | 250.7 | +0.4 | 351 | 3.2 | ARID3A CHD2 ZBTB10 MXD4 CEBPA PLRG1 FOXA1 BRCA1 ZBTB7B ZIC2 | LINC01271 ADNP PSMD10P1 ENSG00000232043 PTPN1 DPM1 MIR645 LINC01270 lnc-TMEM189-6 lnc-CEBPB-6 | |
GH20J050301 | Promoter/Enhancer | 2 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | +13.6 | 13556 | 12.5 | ARID3A CHD2 MXD4 CEBPA ZNF217 FOXA1 MNT DEK IKZF1 ZFP64 | CEBPB ADNP PTPN1 SLC9A8 LINC01270 SNAI1 PSMD10P1 DPM1 MIR645 ENSG00000232043 | |
GH20J050317 | Enhancer | 0.6 | dbSUPER | 0.7 | +3.4 | 3421 | 2.6 | ZIC2 VEZF1 PRDM10 EGR1 TEAD4 ZMYM3 EGR2 ZNF24 EP300 KLF16 | ENSG00000232043 MIR645 PTPN1 LINC01270 LINC01271 lnc-CEBPB-6 CEBPB | |
GH20J050315 | Enhancer | 0.5 | dbSUPER | 0.4 | +5.4 | 5383 | 1.2 | ZNF623 MLLT1 ESRRA E4F1 SUZ12 | PSMD10P1 ADNP ENSG00000232043 MIR645 LINC01270 LINC01271 lnc-CEBPB-6 CEBPB PTPN1 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00000DDCFF_9606 | lncRNA | 2250 | 3 |
Ensembl: ENST00000441214 (view in UCSC) , LNCipedia: LINC01271:1, NONCODE: NONHSAT080297.2, |
URS000075AA11_9606 | lncRNA | 2250 | 1 |
RefSeq: NR_109950, |
URS00008BD331_9606 | lncRNA | 628 | 3 |
LncBook: HSALNT0268603, LNCipedia: LINC01271:5, NONCODE: NONHSAT080295.2, |
URS0000D5CE13_9606 | lncRNA | 753 | 2 |
LncBook: HSALNT0268604, LNCipedia: LINC01271:2, |
URS0000D5700B_9606 | lncRNA | 3209 | 1 |
LNCipedia: LINC01271:6, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2722501 | CNV | deletion | 23290073 |
esv3350249 | CNV | insertion | 20981092 |
nsv1061982 | CNV | loss | 25217958 |
No disorders were found for LINC01271 Gene.