Aliases for LINC01271 Gene

Data sources for LINC01271 Gene:

Subcategory (RNA class) for LINC01271 Gene

lncRNA

Aliases for LINC01271 Gene

External Ids for LINC01271 Gene

Summaries for LINC01271 Gene

GeneCards Summary for LINC01271 Gene

LINC01271 (Long Intergenic Non-Protein Coding RNA 1271) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01271 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01271 Gene

Genomics for LINC01271 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01271 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J050320 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 250.7 +0.4 351 3.2 ARID3A CHD2 ZBTB10 MXD4 CEBPA PLRG1 FOXA1 BRCA1 ZBTB7B ZIC2 LINC01271 ADNP PSMD10P1 ENSG00000232043 PTPN1 DPM1 MIR645 LINC01270 lnc-TMEM189-6 lnc-CEBPB-6
GH20J050301 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.6 13556 12.5 ARID3A CHD2 MXD4 CEBPA ZNF217 FOXA1 MNT DEK IKZF1 ZFP64 CEBPB ADNP PTPN1 SLC9A8 LINC01270 SNAI1 PSMD10P1 DPM1 MIR645 ENSG00000232043
GH20J050317 Enhancer 0.6 dbSUPER 0.7 +3.4 3421 2.6 ZIC2 VEZF1 PRDM10 EGR1 TEAD4 ZMYM3 EGR2 ZNF24 EP300 KLF16 ENSG00000232043 MIR645 PTPN1 LINC01270 LINC01271 lnc-CEBPB-6 CEBPB
GH20J050315 Enhancer 0.5 dbSUPER 0.4 +5.4 5383 1.2 ZNF623 MLLT1 ESRRA E4F1 SUZ12 PSMD10P1 ADNP ENSG00000232043 MIR645 LINC01270 LINC01271 lnc-CEBPB-6 CEBPB PTPN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01271 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01271 Gene

Latest Assembly
chr20:50,299,875-50,321,526
(GRCh38/hg38)
Size:
21,652 bases
Orientation:
Minus strand

Previous Assembly
chr20:48,927,248-48,937,879
(GRCh37/hg19 by Entrez Gene)
Size:
10,632 bases
Orientation:
Minus strand

chr20:48,927,248-48,937,879
(GRCh37/hg19 by Ensembl)
Size:
10,632 bases
Orientation:
Minus strand

Genomic View for LINC01271 Gene

Genes around LINC01271 on UCSC Golden Path with GeneCards custom track
LINC01271 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01271 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01271 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01271 Gene

Proteins for LINC01271 Gene

Post-translational modifications for LINC01271 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01271 Gene

Domains & Families for LINC01271 Gene

Gene Families for LINC01271 Gene

genes like me logo Genes that share domains with LINC01271: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01271 Gene

Function for LINC01271 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01271 Gene

Localization for LINC01271 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01271 Gene

Pathways & Interactions for LINC01271 Gene

PathCards logo

SuperPathways for LINC01271 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01271 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01271 Gene

Drugs & Compounds for LINC01271 Gene

No Compound Related Data Available

Transcripts for LINC01271 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01271 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DDCFF_9606 lncRNA 2250 3

Ensembl: ENST00000441214 (view in UCSC) ,

LNCipedia: LINC01271:1,

NONCODE: NONHSAT080297.2,

URS000075AA11_9606 lncRNA 2250 1

RefSeq: NR_109950,

URS00008BD331_9606 lncRNA 628 3

LncBook: HSALNT0268603,

LNCipedia: LINC01271:5,

NONCODE: NONHSAT080295.2,

URS0000D5CE13_9606 lncRNA 753 2

LncBook: HSALNT0268604,

LNCipedia: LINC01271:2,

URS0000D5700B_9606 lncRNA 3209 1

LNCipedia: LINC01271:6,

LINC01271 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01271 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01271 Gene

No ASD Table

Relevant External Links for LINC01271 Gene

GeneLoc Exon Structure for
LINC01271

Expression for LINC01271 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01271 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01271

genes like me logo Genes that share expression patterns with LINC01271: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01271 Gene

Orthologs for LINC01271 Gene

Evolution for LINC01271 Gene

ENSEMBL:
Gene Tree for LINC01271 (if available)
TreeFam:
Gene Tree for LINC01271 (if available)

No data available for Orthologs for LINC01271 Gene

Paralogs for LINC01271 Gene

No data available for Paralogs for LINC01271 Gene

Variants for LINC01271 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01271 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01271 Gene

Variant ID Type Subtype PubMed ID
esv2722501 CNV deletion 23290073
esv3350249 CNV insertion 20981092
nsv1061982 CNV loss 25217958

Additional Variant Information for LINC01271 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01271

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01271 Gene

Disorders for LINC01271 Gene

Additional Disease Information for LINC01271

No disorders were found for LINC01271 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01271 Gene

Publications for LINC01271 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01271 Gene

Sources for LINC01271 Gene