LINC01270 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1270

GC20P050292
GIFtS:
14
See more...

Aliases for LINC01270 Gene

Data sources for LINC01270 Gene:

Subcategory (RNA class) for LINC01270 Gene

lncRNA

Aliases for LINC01270 Gene

External Ids for LINC01270 Gene

Summaries for LINC01270 Gene

GeneCards Summary for LINC01270 Gene

LINC01270 (Long Intergenic Non-Protein Coding RNA 1270) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01270 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01270 Gene

Genomics for LINC01270 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01270 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01270 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01270 Gene

Latest Assembly
chr20:50,292,709-50,321,497
(GRCh38/hg38)
Size:
28,789 bases
Orientation:
Plus strand

Previous Assembly
chr20:48,909,257-48,931,456
(GRCh37/hg19 by Entrez Gene)
Size:
22,200 bases
Orientation:
Plus strand

chr20:48,909,257-48,931,459
(GRCh37/hg19 by Ensembl)
Size:
22,203 bases
Orientation:
Plus strand

Genomic View for LINC01270 Gene

Genes around LINC01270 on UCSC Golden Path with GeneCards custom track
LINC01270 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01270 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01270 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01270 Gene

Proteins for LINC01270 Gene

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  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01270 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01270 Gene

Domains & Families for LINC01270 Gene

Gene Families for LINC01270 Gene

HGNC:

Suggested Antigen Peptide Sequences for LINC01270 Gene

GenScript: Design optimal peptide antigens:
  • Hypothetical LOC284751 (Q4G0G3_HUMAN)
genes like me logo Genes that share domains with LINC01270: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01270 Gene

Function for LINC01270 Gene

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  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC01270 Gene

Phenotypes for LINC01270 Gene

GenomeRNAi human phenotypes for LINC01270:
genes like me logo Genes that share phenotypes with LINC01270: view

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01270

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01270 Gene

Localization for LINC01270 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01270 Gene

Pathways & Interactions for LINC01270 Gene

PathCards logo

SuperPathways for LINC01270 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01270 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01270 Gene

Drugs & Compounds for LINC01270 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC01270 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01270 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DBE83_9606 lncRNA 945 3

Ensembl: ENST00000457853 (view in UCSC) ,

LNCipedia: LINC01270:7,

NONCODE: NONHSAT147172.2,

URS000075EEAB_9606 lncRNA 2283 2

RefSeq: NR_034124,

LNCipedia: LINC01270:2,

URS0000EEDF19_9606 lncRNA 3047 1

Ensembl: ENST00000653657 (view in UCSC) ,

URS0000EF4645_9606 lncRNA 2951 1

Ensembl: ENST00000663616 (view in UCSC) ,

URS0000EEC064_9606 lncRNA 2629 1

Ensembl: ENST00000655925 (view in UCSC) ,

LINC01270 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01270 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01270

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01270 Gene

No ASD Table

Relevant External Links for LINC01270 Gene

GeneLoc Exon Structure for
LINC01270

Expression for LINC01270 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01270 Gene

mRNA expression in normal human tissues for LINC01270 Gene
mRNA expression by GTEx for LINC01270 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01270

genes like me logo Genes that share expression patterns with LINC01270: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01270 Gene

Orthologs for LINC01270 Gene

Evolution for LINC01270 Gene

ENSEMBL:
Gene Tree for LINC01270 (if available)
TreeFam:
Gene Tree for LINC01270 (if available)

No data available for Orthologs for LINC01270 Gene

Paralogs for LINC01270 Gene

No data available for Paralogs for LINC01270 Gene

Variants for LINC01270 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01270 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01270 Gene

Variant ID Type Subtype PubMed ID
esv2369806 CNV deletion 18987734
esv2722497 CNV deletion 23290073
esv2722498 CNV deletion 23290073
esv2722499 CNV deletion 23290073
esv2722500 CNV deletion 23290073
esv2722501 CNV deletion 23290073
esv3350249 CNV insertion 20981092
esv34129 CNV loss 18971310
esv5287 CNV loss 18987735
nsv1061982 CNV loss 25217958
nsv1130771 CNV deletion 24896259

Additional Variant Information for LINC01270 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01270

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01270 Gene

Disorders for LINC01270 Gene

Additional Disease Information for LINC01270

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC01270 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01270 Gene

Publications for LINC01270 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC01270 gene in Mastermind

Products for LINC01270 Gene

Sources for LINC01270 Gene