Aliases for LINC01270 Gene

Subcategory (RNA class) for LINC01270 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01270 Gene

  • Long Intergenic Non-Protein Coding RNA 1270 2 3 5
  • LINC01270 2 168
  • NONHSAG032001 92
  • HSALNG0130753 167

External Ids for LINC01270 Gene

Summaries for LINC01270 Gene

GeneCards Summary for LINC01270 Gene

LINC01270 (Long Intergenic Non-Protein Coding RNA 1270) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01270 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01270 Gene

Genomics for LINC01270 Gene

GeneHancer (GH) Regulatory Elements for LINC01270 Gene

Promoters and enhancers for LINC01270 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J050291 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 522.3 +1.7 1710 7.1 EP300 HNRNPK TCF12 NRF1 USF1 POLR2G NCOR1 SIX5 FOS ZBTB5 LINC01270 lnc-TMEM189-9 CEBPB ADNP LINC01273 SMIM25 SLC9A8 PTPN1 SNAI1 B4GALT5
GH20J050301 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 26.1 +15.3 15261 12.5 EP300 FOXK2 ZNF217 TCF12 POLR2G USF1 NCOR1 FOS ZIC2 REST CEBPB PTPN1 SLC9A8 LINC01270 SNAI1 ADNP DPM1 MIR645 ENSG00000232043 TMEM189
GH20J050272 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 24.7 -13.0 -13022 16.9 EP300 ZBTB40 ZNF217 CTCF TCF12 USF1 FOS ZNF10 ZIC2 KDM6A CEBPB ADNP PTPN1 SNAI1 SLC9A8 DPM1 LINC01270 ENSG00000232043 KRT18P4 LINC01273
GH20J050290 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 21.9 -3.3 -3308 0.8 MYC ZBTB33 ZNF133 SCRT2 LINC01270 CEBPB SMIM25 SPATA2 lnc-TMEM189-9 lnc-TMEM189-2
GH20J050271 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9 -22.0 -22008 1 CTCF GABPA ZFP91 GATAD1 CHD4 HSF1 KDM1A THRB POLR2A ZNF24 piR-57133-374 CEBPB SLC9A8 PTPN1 SNAI1 SMIM25 ADNP LINC01270 TMEM189 RNF114
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01270 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01270 Gene

Genomic Locations for LINC01270 Gene
chr20:50,292,709-50,321,497
(GRCh38/hg38)
Size:
28,789 bases
Orientation:
Plus strand
chr20:48,909,257-48,931,459
(GRCh37/hg19)
Size:
22,203 bases
Orientation:
Plus strand

Genomic View for LINC01270 Gene

Genes around LINC01270 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01270 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01270 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01270 Gene

Proteins for LINC01270 Gene

Post-translational modifications for LINC01270 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01270 Gene

Domains & Families for LINC01270 Gene

Suggested Antigen Peptide Sequences for LINC01270 Gene

GenScript: Design optimal peptide antigens:
  • Hypothetical LOC284751 (Q4G0G3_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01270 Gene

Function for LINC01270 Gene

Phenotypes From GWAS Catalog for LINC01270 Gene

Phenotypes for LINC01270 Gene

genes like me logo Genes that share phenotypes with LINC01270: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01270

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01270 Gene

Localization for LINC01270 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01270 Gene

Pathways & Interactions for LINC01270 Gene

PathCards logo

SuperPathways for LINC01270 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01270 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01270 Gene

Drugs & Compounds for LINC01270 Gene

No Compound Related Data Available

Transcripts for LINC01270 Gene

mRNA/cDNA for LINC01270 Gene

39 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
14 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
13 LncBook transcripts :
26 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01270

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01270 Gene

No ASD Table

Relevant External Links for LINC01270 Gene

GeneLoc Exon Structure for
LINC01270

Expression for LINC01270 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01270 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01270

genes like me logo Genes that share expression patterns with LINC01270: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01270 Gene

Orthologs for LINC01270 Gene

Evolution for LINC01270 Gene

ENSEMBL:
Gene Tree for LINC01270 (if available)
TreeFam:
Gene Tree for LINC01270 (if available)

No data available for Orthologs for LINC01270 Gene

Paralogs for LINC01270 Gene

No data available for Paralogs for LINC01270 Gene

Variants for LINC01270 Gene

Additional dbSNP identifiers (rs#s) for LINC01270 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01270 Gene

Variant ID Type Subtype PubMed ID
esv2369806 CNV deletion 18987734
esv2722497 CNV deletion 23290073
esv2722498 CNV deletion 23290073
esv2722499 CNV deletion 23290073
esv2722500 CNV deletion 23290073
esv2722501 CNV deletion 23290073
esv3350249 CNV insertion 20981092
esv34129 CNV loss 18971310
esv5287 CNV loss 18987735
nsv1061982 CNV loss 25217958
nsv1130771 CNV deletion 24896259

Additional Variant Information for LINC01270 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01270

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01270 Gene

Disorders for LINC01270 Gene

Additional Disease Information for LINC01270

No disorders were found for LINC01270 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01270 Gene

Publications for LINC01270 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01270 Gene

Sources for LINC01270 Gene