Aliases for LINC01265 Gene

Subcategory (RNA class) for LINC01265 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01265 Gene

  • Long Intergenic Non-Protein Coding RNA 1265 2 3
  • OSMR Antisense RNA 1 (Head To Head) 5
  • NONHSAG040233.2 91
  • NONHSAG040232.2 91
  • HSALNG0041285 164
  • Lnc-RICTOR-54 165
  • HSALNG0041295 164
  • HSALNG0041294 164
  • LINC01265 2
  • OSMR-AS1 5

External Ids for LINC01265 Gene

Summaries for LINC01265 Gene

GeneCards Summary for LINC01265 Gene

LINC01265 (Long Intergenic Non-Protein Coding RNA 1265) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01265 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01265 Gene

Genomics for LINC01265 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01265 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J038843 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.4 -437 5.1 GATAD2A PRDM10 ZNF629 TFE3 ZNF512 IKZF1 NFKBIZ ZNF692 PRDM1 ZIC2 OSMR LINC01265 OSMR-AS1 piR-57337-036 RICTOR
GH05J038829 Enhancer 1.2 Ensembl ENCODE dbSUPER 18.1 +14.7 14678 3.8 GATAD2A CTCF ATF7 NFKBIZ RCOR2 FOXA1 RXRB IRF2 SP1 CEBPA LINC01265 RICTOR LIFR OSMR LOC112267930 OSMR-AS1
GH05J038607 Enhancer 1 Ensembl ENCODE 17.8 +237.9 237900 1.7 LEF1 JUND DPF2 SOX6 TCF12 EP300 CEBPB ZXDB NFE2 NR3C1 LIFR lnc-LIFR-6 LINC01265 OSMR LIFR-AS1 LOC105374735 EGFLAM
GH05J039167 Enhancer 1 ENCODE dbSUPER 17.8 -321.5 -321545 0.2 LEF1 IKZF1 JUND MTA2 NR2C1 BRD9 DPF2 HDAC1 SOX6 GATAD2B LINC01265 LIFR OSMR FYB1 lnc-RICTOR-2 lnc-RICTOR-1 RICTOR
GH05J038870 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.7 -26.5 -26533 4.6 IKZF1 JUND PRDM1 PKNOX1 REST ZNF600 SOX6 CEBPB SP1 HMBOX1 RF00017-4590 OSMR OSMR-AS1 LINC01265 piR-36588-346 RICTOR RF00017-4589
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01265 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01265 Gene

Genomic Locations for LINC01265 Gene
chr5:38,682,581-38,845,829
(GRCh38/hg38)
Size:
163,249 bases
Orientation:
Minus strand
chr5:38,710,469-38,720,375
(GRCh37/hg19)
Size:
9,907 bases
Orientation:
Minus strand

Genomic View for LINC01265 Gene

Genes around LINC01265 on UCSC Golden Path with GeneCards custom track
LINC01265 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01265 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01265 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01265 Gene

Proteins for LINC01265 Gene

Post-translational modifications for LINC01265 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01265 Gene

Domains & Families for LINC01265 Gene

Gene Families for LINC01265 Gene

genes like me logo Genes that share domains with LINC01265: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01265 Gene

Function for LINC01265 Gene

Phenotypes From GWAS Catalog for LINC01265 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01265 Gene

Localization for LINC01265 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01265 Gene

Pathways & Interactions for LINC01265 Gene

PathCards logo

SuperPathways for LINC01265 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01265 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01265 Gene

Drugs & Compounds for LINC01265 Gene

No Compound Related Data Available

Transcripts for LINC01265 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01265 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000056C8F0_9606 lncRNA 800 5

HGNC: 50297,

RefSeq: NR_104631,

Ensembl: ENST00000506463 (view in UCSC) ,

LNCipedia: lnc-RICTOR-54:16,

NONCODE: NONHSAT101103.2,

URS00002ACF17_9606 lncRNA 583 4

Ensembl: ENST00000513480 (view in UCSC) ,

LncBook: HSALNT0086836,

LNCipedia: lnc-RICTOR-54:5,

NONCODE: NONHSAT101104.2,

URS0000546D4F_9606 lncRNA 837 3

Ensembl: ENST00000512519 (view in UCSC) ,

LNCipedia: lnc-RICTOR-54:2,

NONCODE: NONHSAT101111.2,

URS0000EECCB0_9606 lncRNA 2120 1

Ensembl: ENST00000662290 (view in UCSC) ,

URS0000EEC070_9606 lncRNA 882 1

Ensembl: ENST00000636516 (view in UCSC) ,

LINC01265 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01265 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01265 Gene

No ASD Table

Relevant External Links for LINC01265 Gene

GeneLoc Exon Structure for
LINC01265

Expression for LINC01265 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01265 Gene

genes like me logo Genes that share expression patterns with LINC01265: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01265 Gene

Orthologs for LINC01265 Gene

Evolution for LINC01265 Gene

ENSEMBL:
Gene Tree for LINC01265 (if available)
TreeFam:
Gene Tree for LINC01265 (if available)

No data available for Orthologs for LINC01265 Gene

Paralogs for LINC01265 Gene

No data available for Paralogs for LINC01265 Gene

Variants for LINC01265 Gene

Additional dbSNP identifiers (rs#s) for LINC01265 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01265 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372
esv3604771 CNV gain 21293372

Additional Variant Information for LINC01265 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01265

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01265 Gene

Disorders for LINC01265 Gene

Additional Disease Information for LINC01265

No disorders were found for LINC01265 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01265 Gene

Publications for LINC01265 Gene

No publications were found for LINC01265 Gene.

No data available for Mastermind for LINC01265 Gene

Products for LINC01265 Gene

Sources for LINC01265 Gene