Aliases for LINC01264 Gene

Subcategory (RNA class) for LINC01264 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01264 Gene

  • Long Intergenic Non-Protein Coding RNA 1264 2 3 5
  • LINC01264 2 5 165
  • RP11-124O11.2 2 3
  • NONHSAG005697.2 91
  • HSALNG0077519 164

External Ids for LINC01264 Gene

Previous GeneCards Identifiers for LINC01264 Gene

  • GC00U935918

Summaries for LINC01264 Gene

GeneCards Summary for LINC01264 Gene

LINC01264 (Long Intergenic Non-Protein Coding RNA 1264) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01264 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01264 Gene

Genomics for LINC01264 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01264 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J042980 Promoter/Enhancer 1.5 VISTA EPDnew Ensembl ENCODE 600.7 +0.1 70 1.6 HDAC1 SOX6 CTBP1 HES1 NR2C2 MYC CEBPG NR2F1 RCOR1 ZNF584 LINC01264 ENSG00000259869 ENSG00000215146 LINC00839 lnc-RET-3 RET BMS1
GH10J042981 Enhancer 0.4 Ensembl 600.7 +1.4 1407 0.2 RFX1 BMI1 GLIS1 LINC01264 lnc-RET-3 RET BMS1
GH10J042983 Enhancer 0.3 Ensembl 600.7 -1.9 -1894 0.8 SPI1 POLR2A LINC01264 ZNF33B ENSG00000259869 lnc-RET-2 lnc-RET-3 RET BMS1
GH10J042978 Enhancer 0.6 Ensembl 0.7 +2.1 2106 0.4 CREB1 ATF7 JUND ZIC2 ATF2 STAT5A STAT1 TAL1 ATF3 GLIS1 LINC01264 lnc-RET-3 RET BMS1
GH10J042976 Enhancer 0.9 FANTOM5 Ensembl 0.4 +8.4 8375 5.9 CREB1 CTCF ZIC2 ZNF341 CEBPA MYC EP400 SPI1 RCOR1 FOXA1 CSGALNACT2 ENSG00000259869 ZNF33B ENSG00000215146 LINC01264 lnc-RET-3 RET BMS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01264 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01264 Gene

Genomic Locations for LINC01264 Gene
chr10:42,979,017-42,981,507
(GRCh38/hg38)
Size:
2,491 bases
Orientation:
Minus strand

Genomic View for LINC01264 Gene

Genes around LINC01264 on UCSC Golden Path with GeneCards custom track
LINC01264 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01264 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01264 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01264 Gene

Proteins for LINC01264 Gene

Post-translational modifications for LINC01264 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01264 Gene

Domains & Families for LINC01264 Gene

Gene Families for LINC01264 Gene

genes like me logo Genes that share domains with LINC01264: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01264 Gene

Function for LINC01264 Gene

Phenotypes From GWAS Catalog for LINC01264 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01264 Gene

Localization for LINC01264 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01264 Gene

Pathways & Interactions for LINC01264 Gene

PathCards logo

SuperPathways for LINC01264 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01264 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01264 Gene

Drugs & Compounds for LINC01264 Gene

No Compound Related Data Available

Transcripts for LINC01264 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01264 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001CFE12_9606 lncRNA 500 6

HGNC: 50282,

RefSeq: NR_126352,

Ensembl: ENST00000431395 (view in UCSC) ,

LncBook: HSALNT0161787,

LNCipedia: LINC01264:1,

NONCODE: NONHSAT012937.2,

LINC01264 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01264 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01264 Gene

No ASD Table

Relevant External Links for LINC01264 Gene

GeneLoc Exon Structure for
LINC01264

Expression for LINC01264 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01264 Gene

genes like me logo Genes that share expression patterns with LINC01264: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01264 Gene

Orthologs for LINC01264 Gene

Evolution for LINC01264 Gene

ENSEMBL:
Gene Tree for LINC01264 (if available)
TreeFam:
Gene Tree for LINC01264 (if available)

No data available for Orthologs for LINC01264 Gene

Paralogs for LINC01264 Gene

No data available for Paralogs for LINC01264 Gene

Variants for LINC01264 Gene

Additional dbSNP identifiers (rs#s) for LINC01264 Gene

Additional Variant Information for LINC01264 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01264

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01264 Gene

Disorders for LINC01264 Gene

No disorders were found for LINC01264 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01264 Gene

Publications for LINC01264 Gene

  1. The role of PinX1 in growth control of breast cancer cells and its potential molecular mechanism by mRNA and lncRNA expression profiles screening. (PMID: 24672800) Shi R … Ma WL (BioMed research international 2014) 2 3

Products for LINC01264 Gene

Sources for LINC01264 Gene