Aliases for LINC01255 Gene

Subcategory (RNA class) for LINC01255 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01255 Gene

  • Long Intergenic Non-Protein Coding RNA 1255 2 3 5
  • LINC01255 2 168
  • Lnc-SLC35G4-4 168
  • NONHSAG023370 92
  • HSALNG0120046 167
  • HSALNG0120048 167

External Ids for LINC01255 Gene

Summaries for LINC01255 Gene

GeneCards Summary for LINC01255 Gene

LINC01255 (Long Intergenic Non-Protein Coding RNA 1255) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01255 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01255 Gene

Genomics for LINC01255 Gene

GeneHancer (GH) Regulatory Elements for LINC01255 Gene

Promoters and enhancers for LINC01255 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J011479 Enhancer 0.3 Ensembl 513.1 -0.5 -529 0.6 ZIC2 LINC01255 lnc-PIEZO2-3 ENSG00000267564 lnc-SLC35G4-5
GH18J011498 Enhancer 1.1 Ensembl ENCODE 29.8 +20.5 20470 4.2 EP300 FOXK2 TCF12 POLR2G NCOR1 JUND FOS KDM6A TCF7 FOXA1 LINC01255 ENSG00000267564 ENSG00000267371
GH18J011519 Enhancer 0.8 Ensembl ENCODE 25.9 +38.9 38871 1 CTCF GABPA REST RAD21 TRIM22 SMC3 YY1 ZNF654 ZFP37 TEAD3 LINC01255 ENSG00000267564 ENSG00000267371
GH18J011497 Enhancer 0.9 Ensembl ENCODE 20.1 +17.2 17247 2.2 ZBTB25 CEBPB SAP130 FOXP1 SMAD4 FOS BCL6 RARA NR2F6 ATF2 LINC01255 ENSG00000267564 ENSG00000267371
GH18J011511 Enhancer 0.7 Ensembl 20.2 +31.8 31771 0.8 EP300 TCF12 ARNT IKZF1 NFATC3 STAT3 ATF2 JUNB MTA3 SPI1 LINC01255 ENSG00000267564 ENSG00000267371
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01255 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01255 Gene

Genomic Locations for LINC01255 Gene
chr18:11,480,030-11,523,087
(GRCh38/hg38)
Size:
43,058 bases
Orientation:
Plus strand
chr18:11,488,569-11,506,982
(GRCh37/hg19)
Size:
18,414 bases
Orientation:
Plus strand

Genomic View for LINC01255 Gene

Genes around LINC01255 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01255 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01255 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01255 Gene

Proteins for LINC01255 Gene

Post-translational modifications for LINC01255 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01255 Gene

Domains & Families for LINC01255 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01255 Gene

Function for LINC01255 Gene

Phenotypes From GWAS Catalog for LINC01255 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01255 Gene

Localization for LINC01255 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01255 Gene

Pathways & Interactions for LINC01255 Gene

PathCards logo

SuperPathways for LINC01255 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01255 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01255 Gene

Drugs & Compounds for LINC01255 Gene

No Compound Related Data Available

Transcripts for LINC01255 Gene

mRNA/cDNA for LINC01255 Gene

57 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
40 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
15 NONCODE transcripts :
21 LncBook transcripts :
19 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01255 Gene

No ASD Table

Relevant External Links for LINC01255 Gene

GeneLoc Exon Structure for
LINC01255

Expression for LINC01255 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01255 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01255 Gene

This gene is overexpressed in Testis (x52.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01255

genes like me logo Genes that share expression patterns with LINC01255: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01255 Gene

Orthologs for LINC01255 Gene

Evolution for LINC01255 Gene

ENSEMBL:
Gene Tree for LINC01255 (if available)
TreeFam:
Gene Tree for LINC01255 (if available)

No data available for Orthologs for LINC01255 Gene

Paralogs for LINC01255 Gene

No data available for Paralogs for LINC01255 Gene

Variants for LINC01255 Gene

Additional dbSNP identifiers (rs#s) for LINC01255 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01255 Gene

Variant ID Type Subtype PubMed ID
dgv5855n54 CNV loss 21841781
esv3303693 CNV mobile element insertion 20981092
esv3441468 CNV insertion 20981092
esv3582973 CNV loss 25503493
nsv1057995 CNV gain 25217958
nsv1129331 OTHER inversion 24896259
nsv1153637 OTHER inversion 26484159
nsv2204 CNV deletion 18451855
nsv458029 CNV gain 19166990
nsv576480 CNV gain 21841781
nsv576482 CNV gain 21841781

Additional Variant Information for LINC01255 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01255

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01255 Gene

Disorders for LINC01255 Gene

Additional Disease Information for LINC01255

No disorders were found for LINC01255 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01255 Gene

Publications for LINC01255 Gene

  1. Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms. (PMID: 23212062) Fanous AH … Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium (The American journal of psychiatry 2012) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC01255 Gene

Products for LINC01255 Gene

Sources for LINC01255 Gene