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Aliases for LINC01252 Gene

Subcategory (RNA class) for LINC01252 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01252 Gene

  • Long Intergenic Non-Protein Coding RNA 1252 2 3 5

External Ids for LINC01252 Gene

Previous GeneCards Identifiers for LINC01252 Gene

  • GC12P011706

Summaries for LINC01252 Gene

GeneCards Summary for LINC01252 Gene

LINC01252 (Long Intergenic Non-Protein Coding RNA 1252) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01252 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01252 Gene

Genomics for LINC01252 Gene

GeneHancer (GH) Regulatory Elements for LINC01252 Gene

Promoters and enhancers for LINC01252 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J011544 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -1.9 -1941 3.4 ATF1 PKNOX1 JUN EBF1 ZBTB40 BATF RELA POLR2A EED ATF7 GC12P011551 RNU7-60P LINC01252 ENSG00000256237 ENSG00000274551
GH12J011169 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 53.1 -376.6 -376589 3 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B PRR4 TAS2R14 ENSG00000256712 PRH1 PRH1-PRR4 SMIM10L1 ENSG00000275778 LINC01252 TAS2R64P TAS2R15P
GH12J010891 Enhancer 0.9 ENCODE 39.5 -655.9 -655861 1.2 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 NFKBIZ RXRA SP5 PRR4 LINC01252 TAS2R8 TAS2R7 TAS2R12P ENSG00000284826 ENSG00000275778 PRH1 PRH1-PRR4
GH12J012032 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +485.1 485051 2 ELF3 PKNOX1 RB1 ARID4B ZNF2 RAD21 ETS1 ARID2 SCRT2 ZNF143 BCL2L14 LINC01252 RNU7-60P ETV6 GC12P012010
GH12J011580 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.8 +32.8 32770 1.6 NFIB STAT5A BMI1 BATF ZNF2 IRF4 RAD21 ZNF143 ATF7 FOS ETV6 RNU7-60P LINC01252 ENSG00000256237
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01252 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01252 Gene

Genomic Locations for LINC01252 Gene
chr12:11,548,030-11,590,369
(GRCh38/hg38)
Size:
42,340 bases
Orientation:
Plus strand
chr12:11,700,964-11,743,303
(GRCh37/hg19)

Genomic View for LINC01252 Gene

Genes around LINC01252 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01252 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01252 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01252 Gene

Proteins for LINC01252 Gene

Post-translational modifications for LINC01252 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01252 Gene

Domains & Families for LINC01252 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01252 Gene

Function for LINC01252 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01252 Gene

Localization for LINC01252 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01252 Gene

Pathways & Interactions for LINC01252 Gene

SuperPathways for LINC01252 Gene

No Data Available

Interacting Proteins for LINC01252 Gene

Gene Ontology (GO) - Biological Process for LINC01252 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01252 Gene

Drugs & Compounds for LINC01252 Gene

No Compound Related Data Available

Transcripts for LINC01252 Gene

mRNA/cDNA for LINC01252 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01252 Gene

No ASD Table

Relevant External Links for LINC01252 Gene

GeneLoc Exon Structure for
LINC01252
ECgene alternative splicing isoforms for
LINC01252

Expression for LINC01252 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01252 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01252 Gene:

LINC01252
genes like me logo Genes that share expression patterns with LINC01252: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01252 Gene

Orthologs for LINC01252 Gene

Evolution for LINC01252 Gene

ENSEMBL:
Gene Tree for LINC01252 (if available)
TreeFam:
Gene Tree for LINC01252 (if available)

No data available for Orthologs for LINC01252 Gene

Paralogs for LINC01252 Gene

No data available for Paralogs for LINC01252 Gene

Variants for LINC01252 Gene

Sequence variations from dbSNP and Humsavar for LINC01252 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000359800 -- 11,554,964(+) C/G intron_variant
rs1000360300 -- 11,560,714(+) C/T intron_variant
rs1000473384 -- 11,560,948(+) C/T intron_variant
rs1000884356 -- 11,549,734(+) A/C intron_variant
rs1001003590 -- 11,547,316(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01252 Gene

Variant ID Type Subtype PubMed ID
dgv2382n54 CNV gain 21841781
esv2759879 CNV loss 17122850
esv3892143 CNV gain 25118596
nsv1046355 CNV loss 25217958
nsv428272 CNV gain+loss 18775914
nsv469112 CNV gain 19166990

Additional Variant Information for LINC01252 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01252

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01252 Gene

Disorders for LINC01252 Gene

Additional Disease Information for LINC01252

No disorders were found for LINC01252 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01252 Gene

Publications for LINC01252 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for LINC01252 Gene

Sources for LINC01252 Gene

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