Aliases for LINC01238 Gene

Data sources for LINC01238 Gene:

Subcategory (RNA class) for LINC01238 Gene


Aliases for LINC01238 Gene

External Ids for LINC01238 Gene

Summaries for LINC01238 Gene

GeneCards Summary for LINC01238 Gene

LINC01238 (Long Intergenic Non-Protein Coding RNA 1238) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01238 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01238 Gene

Genomics for LINC01238 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01238 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J241970 Promoter/Enhancer 0.9 EPDnew Ensembl 260.7 +0.3 314 0.8 VEZF1 NRF1 TCF12 CEBPG TEAD4 SP7 ARID1B NR2C2 CBFA2T3 LINC01238 lnc-PDCD1-6 ENSG00000261186 LOC285097 FAM240C LINC01237
GH02J241965 Enhancer 0.9 ENCODE 9.7 -4.4 -4400 2 ZSCAN16 IKZF1 ZIC2 IRF4 RUNX1 SAP130 ZNF341 EBF1 TEAD3 JUND HSALNG0023738 LINC01238 FAM240C lnc-PDCD1-1 LINC01237
GH02J241890 Enhancer 1.3 Ensembl ENCODE dbSUPER 6.2 -76.9 -76945 7.3 ZBTB10 CEBPA ZNF217 MNT HES1 BHLHE40 ZBTB7B NONO MBD2 CUX1 ENSG00000224272 LINC01237 RTP5 D2HGDH ENSG00000234793 ING5 NEU4 FAM240C LINC01881 LINC01238
GH02J241932 Enhancer 0.8 Ensembl ENCODE 8 -37.3 -37348 1.5 FEZF1 MAFF ZNF316 PRDM6 MAFK MAFG ATF2 TRIM28 ZNF629 FOS FAM240C LINC01238 lnc-PDCD1-1 HSALNG0023738 LINC01237
GH02J241946 Enhancer 0.6 Ensembl 8.9 -24.1 -24081 1.2 PLRG1 FOXA1 NONO HES1 MYNN YBX1 STAT5A NFATC1 HDAC2 ATM LINC01237 ENSG00000234793 D2HGDH ENSG00000261186 NEU4 LINC01238 HSALNG0023738 FAM240C lnc-PDCD1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01238 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01238 Gene

Latest Assembly
6,596 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
6,594 bases
Plus strand

(GRCh37/hg19 by Ensembl)
6,594 bases
Plus strand

Genomic View for LINC01238 Gene

Genes around LINC01238 on UCSC Golden Path with GeneCards custom track
LINC01238 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01238 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01238 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01238 Gene

Proteins for LINC01238 Gene

Post-translational modifications for LINC01238 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01238 Gene

Domains & Families for LINC01238 Gene

Gene Families for LINC01238 Gene

genes like me logo Genes that share domains with LINC01238: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01238 Gene

Function for LINC01238 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01238 Gene

Localization for LINC01238 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01238 Gene

Pathways & Interactions for LINC01238 Gene

PathCards logo

SuperPathways for LINC01238 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01238 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01238 Gene

Drugs & Compounds for LINC01238 Gene

No Compound Related Data Available

Transcripts for LINC01238 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01238 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005478F3_9606 lncRNA 2176 5

RefSeq: NR_110592,

Ensembl: ENST00000429456 (view in UCSC) ,

LncBook: HSALNT0050032, HSALNT0050033, HSALNT0050035,

LNCipedia: LINC01238:8,


URS00004A69A5_9606 lncRNA 593 4

Ensembl: ENST00000416204 (view in UCSC) ,

LncBook: HSALNT0050038,

LNCipedia: LINC01238:9,


URS000009D978_9606 lncRNA 430 4

Ensembl: ENST00000426962 (view in UCSC) ,

LncBook: HSALNT0050041,

LNCipedia: LINC01238:11,


URS00003C8A56_9606 lncRNA 601 3

LncBook: HSALNT0050044,

LNCipedia: LINC01238:13,


URS00008BD44E_9606 lncRNA 555 3

LncBook: HSALNT0050039,

LNCipedia: LINC01238:10,


LINC01238 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01238 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01238 Gene

No ASD Table

Relevant External Links for LINC01238 Gene

GeneLoc Exon Structure for

Expression for LINC01238 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01238

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01238 Gene

Orthologs for LINC01238 Gene

Evolution for LINC01238 Gene

Gene Tree for LINC01238 (if available)
Gene Tree for LINC01238 (if available)

No data available for Orthologs for LINC01238 Gene

Paralogs for LINC01238 Gene

No data available for Paralogs for LINC01238 Gene

Variants for LINC01238 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01238 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01238 Gene

Variant ID Type Subtype PubMed ID
dgv165e55 CNV loss 17911159
dgv167e55 CNV loss 17911159
dgv4200n100 CNV loss 25217958
dgv4201n100 CNV gain 25217958
dgv4202n100 CNV loss 25217958
dgv4203n100 CNV loss 25217958
dgv4204n100 CNV loss 25217958
dgv496n27 CNV loss 19166990
dgv497n27 CNV loss 19166990
dgv498n27 CNV loss 19166990
dgv7399n54 CNV loss 21841781
dgv7400n54 CNV loss 21841781
dgv7401n54 CNV loss 21841781
dgv7402n54 CNV loss 21841781
dgv7403n54 CNV loss 21841781
dgv7404n54 CNV loss 21841781
dgv7405n54 CNV loss 21841781
dgv7406n54 CNV loss 21841781
dgv7407n54 CNV loss 21841781
dgv90e203 CNV gain+loss 21179565
esv21498 CNV gain+loss 19812545
esv2421480 CNV deletion 20811451
esv2658929 CNV deletion 23128226
esv2667595 CNV deletion 23128226
esv2670320 CNV deletion 23128226
esv33229 CNV gain+loss 17666407
esv34605 CNV gain 17911159
esv3561320 CNV deletion 23714750
esv3594850 CNV loss 21293372
esv3594853 CNV loss 21293372
esv3594854 CNV gain 21293372
esv3594855 CNV loss 21293372
esv3893582 CNV gain 25118596
esv3893583 CNV gain 25118596
esv3893584 CNV loss 25118596
nsv1002941 CNV gain 25217958
nsv1005398 CNV gain+loss 25217958
nsv1007371 CNV loss 25217958
nsv1013958 CNV loss 25217958
nsv10233 CNV gain+loss 18304495
nsv1152056 CNV deletion 26484159
nsv428411 CNV loss 18775914
nsv460171 CNV loss 19166990
nsv469780 CNV loss 16826518
nsv470533 CNV loss 18288195
nsv471619 CNV loss 15918152
nsv584991 CNV loss 21841781
nsv585065 CNV gain+loss 21841781
nsv585084 CNV loss 21841781
nsv818120 CNV loss 17921354
nsv997984 CNV gain 25217958
nsv998059 CNV loss 25217958

Additional Variant Information for LINC01238 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01238 Gene

Disorders for LINC01238 Gene

Additional Disease Information for LINC01238

No disorders were found for LINC01238 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01238 Gene

Publications for LINC01238 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC01238 Gene

Products for LINC01238 Gene

Sources for LINC01238 Gene