LINC01237 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1237

GC02P241881
GIFtS:
12
See more...

Aliases for LINC01237 Gene

Data sources for LINC01237 Gene:

Subcategory (RNA class) for LINC01237 Gene

lncRNA

Aliases for LINC01237 Gene

External Ids for LINC01237 Gene

Previous GeneCards Identifiers for LINC01237 Gene

  • GC02P242826

Summaries for LINC01237 Gene

GeneCards Summary for LINC01237 Gene

LINC01237 (Long Intergenic Non-Protein Coding RNA 1237) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01237 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01237 Gene

Genomics for LINC01237 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01237 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01237 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01237 Gene

Latest Assembly
chr2:241,881,362-242,078,722
(GRCh38/hg38)
Size:
197,361 bases
Orientation:
Plus strand

Previous Assembly
chr2:242,823,514-243,020,873
(GRCh37/hg19 by Entrez Gene)
Size:
197,360 bases
Orientation:
Plus strand

chr2:242,823,514-243,020,873
(GRCh37/hg19 by Ensembl)
Size:
197,360 bases
Orientation:
Plus strand

Genomic View for LINC01237 Gene

Genes around LINC01237 on UCSC Golden Path with GeneCards custom track
LINC01237 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01237 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01237 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01237 Gene

Proteins for LINC01237 Gene

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Post-translational modifications for LINC01237 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01237 Gene

Domains & Families for LINC01237 Gene

Gene Families for LINC01237 Gene

HGNC:
genes like me logo Genes that share domains with LINC01237: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01237 Gene

Function for LINC01237 Gene

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  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01237 Gene

Localization for LINC01237 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01237 Gene

Pathways & Interactions for LINC01237 Gene

PathCards logo

SuperPathways for LINC01237 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01237 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01237 Gene

Drugs & Compounds for LINC01237 Gene

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No Compound Related Data Available

Transcripts for LINC01237 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01237 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C278A_9606 lncRNA 843 4

Ensembl: ENST00000430555 (view in UCSC) ,

LncBook: HSALNT0050017,

LNCipedia: LINC01237:1,

NONCODE: NONHSAT077999.2,

URS000038B3B7_9606 lncRNA 589 4

Ensembl: ENST00000457686 (view in UCSC) ,

LncBook: HSALNT0050020,

LNCipedia: LINC01237:4,

NONCODE: NONHSAT078001.2,

URS0000567BD0_9606 lncRNA 569 4

Ensembl: ENST00000439601 (view in UCSC) ,

LncBook: HSALNT0050027,

LNCipedia: LINC01237:9,

NONCODE: NONHSAT078006.2,

URS00004DBD45_9606 lncRNA 470 4

Ensembl: ENST00000429947 (view in UCSC) ,

LncBook: HSALNT0050025,

LNCipedia: LINC01237:8,

NONCODE: NONHSAT078004.2,

URS000075E1A2_9606 lncRNA 576 3

RefSeq: NR_110220,

LncBook: HSALNT0050018,

LNCipedia: LINC01237:2,

LINC01237 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01237 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01237 Gene

No ASD Table

Relevant External Links for LINC01237 Gene

GeneLoc Exon Structure for
LINC01237

Expression for LINC01237 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01237 Gene

mRNA expression in normal human tissues for LINC01237 Gene
mRNA expression by GTEx for LINC01237 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01237 Gene

This gene is overexpressed in Pancreas (x8.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01237

genes like me logo Genes that share expression patterns with LINC01237: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01237 Gene

Orthologs for LINC01237 Gene

Evolution for LINC01237 Gene

ENSEMBL:
Gene Tree for LINC01237 (if available)
TreeFam:
Gene Tree for LINC01237 (if available)

No data available for Orthologs for LINC01237 Gene

Paralogs for LINC01237 Gene

No data available for Paralogs for LINC01237 Gene

Variants for LINC01237 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01237 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01237 Gene

Variant ID Type Subtype PubMed ID
dgv165e55 CNV loss 17911159
dgv167e55 CNV loss 17911159
dgv2197n106 CNV duplication 24896259
dgv2381e59 CNV duplication 20981092
dgv4200n100 CNV loss 25217958
dgv4201n100 CNV gain 25217958
dgv4202n100 CNV loss 25217958
dgv4203n100 CNV loss 25217958
dgv4204n100 CNV loss 25217958
dgv4205n100 CNV loss 25217958
dgv4206n100 CNV loss 25217958
dgv4207n100 CNV loss 25217958
dgv4208n100 CNV gain 25217958
dgv4209n100 CNV gain 25217958
dgv4210n100 CNV gain+loss 25217958
dgv4211n100 CNV loss 25217958
dgv4212n100 CNV loss 25217958
dgv4213n100 CNV loss 25217958
dgv4214n100 CNV gain 25217958
dgv4215n100 CNV gain 25217958
dgv4216n100 CNV gain 25217958
dgv496n27 CNV loss 19166990
dgv497n27 CNV loss 19166990
dgv498n27 CNV loss 19166990
dgv499n27 CNV gain 19166990
dgv500n27 CNV loss 19166990
dgv7399n54 CNV loss 21841781
dgv7400n54 CNV loss 21841781
dgv7401n54 CNV loss 21841781
dgv7402n54 CNV loss 21841781
dgv7403n54 CNV loss 21841781
dgv7404n54 CNV loss 21841781
dgv7405n54 CNV loss 21841781
dgv7406n54 CNV loss 21841781
dgv7407n54 CNV loss 21841781
dgv7408n54 CNV loss 21841781
dgv7409n54 CNV loss 21841781
dgv7410n54 CNV gain+loss 21841781
dgv7411n54 CNV loss 21841781
dgv7412n54 CNV loss 21841781
dgv7413n54 CNV loss 21841781
dgv7414n54 CNV loss 21841781
dgv7415n54 CNV loss 21841781
dgv7416n54 CNV gain+loss 21841781
dgv7417n54 CNV gain 21841781
dgv7418n54 CNV loss 21841781
dgv7419n54 CNV loss 21841781
dgv7420n54 CNV gain+loss 21841781
dgv767e214 CNV loss 21293372
dgv768e214 CNV gain 21293372
dgv90e203 CNV gain+loss 21179565
esv1001719 CNV deletion 20482838
esv1023491 CNV deletion 17803354
esv1049514 CNV deletion 17803354
esv1129157 CNV deletion 17803354
esv1130732 CNV insertion 17803354
esv1250871 CNV insertion 17803354
esv1444162 CNV deletion 17803354
esv1565686 CNV deletion 17803354
esv2084831 CNV deletion 18987734
esv21498 CNV gain+loss 19812545
esv2400432 CNV deletion 18987734
esv2421480 CNV deletion 20811451
esv2467356 CNV insertion 19546169
esv2478598 CNV deletion 19546169
esv2549138 CNV deletion 19546169
esv2562104 CNV deletion 19546169
esv2619806 CNV insertion 19546169
esv2657795 CNV deletion 23128226
esv2658929 CNV deletion 23128226
esv2663474 CNV deletion 23128226
esv2663714 CNV deletion 23128226
esv2665721 CNV deletion 23128226
esv2666480 CNV deletion 23128226
esv2667595 CNV deletion 23128226
esv2670320 CNV deletion 23128226
esv2678854 CNV deletion 23128226
esv2838347 CNV deletion 24192839
esv29953 CNV loss 18421352
esv33229 CNV gain+loss 17666407
esv3383897 CNV duplication 20981092
esv3387264 CNV duplication 20981092
esv3391405 CNV duplication 20981092
esv3392385 CNV duplication 20981092
esv3408926 CNV duplication 20981092
esv3415883 CNV duplication 20981092
esv3427505 CNV duplication 20981092
esv3443168 CNV duplication 20981092
esv3449107 CNV duplication 20981092
esv34605 CNV gain 17911159
esv3561320 CNV deletion 23714750
esv3561322 CNV deletion 23714750
esv3561324 CNV deletion 23714750
esv3594848 CNV loss 21293372
esv3594849 CNV loss 21293372
esv3594850 CNV loss 21293372
esv3594851 CNV loss 21293372
esv3594852 CNV loss 21293372
esv3594853 CNV loss 21293372
esv3594854 CNV gain 21293372
esv3594855 CNV loss 21293372
esv3594856 CNV loss 21293372
esv3594857 CNV loss 21293372
esv3594858 CNV loss 21293372
esv3594859 CNV loss 21293372
esv3594860 CNV gain 21293372
esv3594862 CNV loss 21293372
esv3594863 CNV loss 21293372
esv3594864 CNV loss 21293372
esv3594867 CNV loss 21293372
esv3893580 CNV loss 25118596
esv3893581 CNV loss 25118596
esv3893582 CNV gain 25118596
esv3893583 CNV gain 25118596
esv3893584 CNV loss 25118596
esv4158 CNV loss 18987735
esv989996 CNV insertion 20482838
esv990345 CNV insertion 20482838
esv991563 CNV deletion 20482838
nsv1002941 CNV gain 25217958
nsv1005312 CNV loss 25217958
nsv1005398 CNV gain+loss 25217958
nsv1007202 CNV loss 25217958
nsv1007371 CNV loss 25217958
nsv1009698 CNV loss 25217958
nsv1009791 CNV loss 25217958
nsv1013958 CNV loss 25217958
nsv10233 CNV gain+loss 18304495
nsv10234 CNV gain 18304495
nsv10235 CNV gain+loss 18304495
nsv1076508 CNV duplication 25765185
nsv1076834 CNV insertion 25765185
nsv1111209 CNV tandem duplication 24896259
nsv1112345 CNV deletion 24896259
nsv1116840 CNV deletion 24896259
nsv1120392 CNV tandem duplication 24896259
nsv1129655 CNV tandem duplication 24896259
nsv1138908 CNV deletion 24896259
nsv1138909 CNV deletion 24896259
nsv1141793 CNV insertion 24896259
nsv1142300 CNV tandem duplication 24896259
nsv1143119 CNV deletion 24896259
nsv1152056 CNV deletion 26484159
nsv1153555 CNV duplication 26484159
nsv213662 CNV deletion 16902084
nsv214845 CNV deletion 16902084
nsv229 CNV insertion 15895083
nsv3245 CNV insertion 18451855
nsv3246 CNV deletion 18451855
nsv428411 CNV loss 18775914
nsv460171 CNV loss 19166990
nsv460258 CNV loss 19166990
nsv469780 CNV loss 16826518
nsv470533 CNV loss 18288195
nsv471619 CNV loss 15918152
nsv479056 CNV novel sequence insertion 20440878
nsv514126 CNV loss 21397061
nsv584991 CNV loss 21841781
nsv585021 CNV loss 21841781
nsv585065 CNV gain+loss 21841781
nsv585084 CNV loss 21841781
nsv585111 CNV loss 21841781
nsv585121 CNV loss 21841781
nsv585123 CNV loss 21841781
nsv585135 CNV loss 21841781
nsv585136 CNV gain 21841781
nsv585151 CNV gain 21841781
nsv585152 CNV loss 21841781
nsv585153 CNV loss 21841781
nsv585160 CNV loss 21841781
nsv585161 CNV loss 21841781
nsv818120 CNV loss 17921354
nsv820104 CNV gain 19587683
nsv821575 CNV deletion 20802225
nsv955302 CNV deletion 24416366
nsv955303 CNV deletion 24416366
nsv955304 CNV deletion 24416366
nsv961576 CNV duplication 23825009
nsv963785 CNV duplication 23825009
nsv963786 CNV duplication 23825009
nsv979192 CNV duplication 23825009
nsv997984 CNV gain 25217958
nsv998059 CNV loss 25217958

Additional Variant Information for LINC01237 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01237

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01237 Gene

Disorders for LINC01237 Gene

Additional Disease Information for LINC01237

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC01237 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01237 Gene

Publications for LINC01237 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for LINC01237 gene in Mastermind

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Sources for LINC01237 Gene