Aliases for LINC01234 Gene

Data sources for LINC01234 Gene:

Subcategory (RNA class) for LINC01234 Gene

lncRNA

Aliases for LINC01234 Gene

External Ids for LINC01234 Gene

Previous GeneCards Identifiers for LINC01234 Gene

  • GC12M114118
  • GC12M113679

Summaries for LINC01234 Gene

GeneCards Summary for LINC01234 Gene

LINC01234 (Long Intergenic Non-Protein Coding RNA 1234) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01234 include Squamous Cell Carcinoma and Gastric Cancer.

Additional gene information for LINC01234 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01234 Gene

Genomics for LINC01234 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01234 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J113772 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 250.7 +0.4 434 1.5 TBP MNT IKZF1 SMAD5 MBD2 BHLHE40 MCM7 HOMEZ ARNT RAD51 LINC01234 RBM19 lnc-SDSL-8 LHX5
GH12J113767 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 250.4 +7.2 7207 1.8 ZFP64 KDM6A FOXA2 ZNF511 SMAD4 RXRA MIER3 GABPB1 RARA TEAD3 LINC01234 RBM19 lnc-SDSL-8 LHX5
GH12J113220 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.9 +551.6 551550 4.2 CHD2 TBP SP1 MXD4 CEBPA NR2C1 MNT IKZF1 SMAD5 MBD2 TPCN1 HSALNG0094144 IQCD RITA1 RBM19 RASAL1 PTPN11 DDX54 ENSG00000201208 RPH3A
GH12J113393 Enhancer 0.7 ENCODE 9.9 +380.7 380697 0.2 MBD2 BHLHE40 SIN3A RXRA ZBTB33 KLF9 FOXA2 DEAF1 ZNF316 KDM1A SDSL RPH3A LINC01234 HSALNG0094156 lnc-SLC8B1-1 SDS SLC8B1
GH12J113762 Enhancer 0.8 FANTOM5 Ensembl 0.4 +11.2 11207 1.8 IKZF1 PAX8 ZNF48 RFX1 ZSCAN4 ZNF184 MNT KDM1A POLR2A RAD21 LINC01234 lnc-SDSL-8 RBM19 LHX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01234 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01234 Gene

Latest Assembly
chr12:113,583,872-113,773,908
(GRCh38/hg38)
Size:
190,037 bases
Orientation:
Minus strand

Previous Assembly
chr12:114,182,382-114,211,488
(GRCh37/hg19 by Entrez Gene)
Size:
29,107 bases
Orientation:
Minus strand

chr12:114,117,264-114,211,488
(GRCh37/hg19 by Ensembl)
Size:
94,225 bases
Orientation:
Minus strand

Genomic View for LINC01234 Gene

Genes around LINC01234 on UCSC Golden Path with GeneCards custom track
LINC01234 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01234 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01234 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01234 Gene

Proteins for LINC01234 Gene

Post-translational modifications for LINC01234 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01234 Gene

Domains & Families for LINC01234 Gene

Gene Families for LINC01234 Gene

genes like me logo Genes that share domains with LINC01234: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01234 Gene

Function for LINC01234 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01234 Gene

Localization for LINC01234 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01234 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01234 Gene

Pathways & Interactions for LINC01234 Gene

PathCards logo

SuperPathways for LINC01234 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01234 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01234 Gene

Drugs & Compounds for LINC01234 Gene

No Compound Related Data Available

Transcripts for LINC01234 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01234 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F5775_9606 lncRNA 2090 5

RefSeq: NR_110025,

Ensembl: ENST00000547963 (view in UCSC) ,

LncBook: HSALNT0288956,

LNCipedia: LINC01234:1,

NONCODE: NONHSAT030854.2,

URS0000195234_9606 lncRNA 702 4

Ensembl: ENST00000551982 (view in UCSC) ,

LncBook: HSALNT0195152,

LNCipedia: LINC01234:9,

NONCODE: NONHSAT030853.2,

URS00005BE013_9606 lncRNA 589 3

Ensembl: ENST00000550905 (view in UCSC) ,

LNCipedia: LINC01234:4,

NONCODE: NONHSAT030851.2,

URS0000759D3F_9606 lncRNA 2225 2

RefSeq: NR_110026,

LNCipedia: LINC01234:3,

URS0000EEF381_9606 lncRNA 3402 1

Ensembl: ENST00000655514 (view in UCSC) ,

LINC01234 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01234 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01234 Gene

No ASD Table

Relevant External Links for LINC01234 Gene

GeneLoc Exon Structure for
LINC01234

Expression for LINC01234 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01234 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01234 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.3), Brain - Cortex (x7.7), Brain - Anterior cingulate cortex (BA24) (x6.2), Brain - Amygdala (x5.1), and Brain - Hypothalamus (x4.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01234

genes like me logo Genes that share expression patterns with LINC01234: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01234 Gene

Orthologs for LINC01234 Gene

Evolution for LINC01234 Gene

ENSEMBL:
Gene Tree for LINC01234 (if available)
TreeFam:
Gene Tree for LINC01234 (if available)

No data available for Orthologs for LINC01234 Gene

Paralogs for LINC01234 Gene

No data available for Paralogs for LINC01234 Gene

Variants for LINC01234 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01234 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01234 Gene

Variant ID Type Subtype PubMed ID
esv2761771 CNV loss 21179565
esv3630792 CNV gain 21293372
nsv455718 CNV loss 19166990
nsv560271 CNV loss 21841781

Additional Variant Information for LINC01234 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01234

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01234 Gene

Disorders for LINC01234 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01234 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
squamous cell carcinoma
  • epidermoid carcinoma
gastric cancer
  • gastric cancer, somatic
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01234

genes like me logo Genes that share disorders with LINC01234: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01234 Gene

Publications for LINC01234 Gene

  1. LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma. (PMID: 24522499) Li J … He J (Gut 2014) 2 3 74
  2. Long Noncoding RNA LINC01234 Functions as a Competing Endogenous RNA to Regulate CBFB Expression by Sponging miR-204-5p in Gastric Cancer. (PMID: 29386218) Chen X … Wang Z (Clinical cancer research : an official journal of the American Association for Cancer Research 2018) 3 74
  3. Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2. (PMID: 28978132) Guo L … Li Q (Oncotarget 2017) 2 3
  4. Identification of aberrantly expressed long non-coding RNAs in stomach adenocarcinoma. (PMID: 28484081) Gu J … Wu G (Oncotarget 2017) 2 3
  5. Up-regulated LINC01234 promotes non-small-cell lung cancer cell metastasis by activating VAV3 and repressing BTG2 expression. (PMID: 31959200) Chen Z … Wang Z (Journal of hematology & oncology 2020) 3

Products for LINC01234 Gene

Sources for LINC01234 Gene