Aliases for LINC01233 Gene

Subcategory (RNA class) for LINC01233 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01233 Gene

  • Long Intergenic Non-Protein Coding RNA 1233 2 3 5
  • LINC01233 2 5 165
  • XLOC_013014 2 3
  • NONHSAG025312.2 91
  • HSALNG0124979 164

External Ids for LINC01233 Gene

Previous GeneCards Identifiers for LINC01233 Gene

  • GC19P022717
  • GC19P022535
  • GC19P022730

Summaries for LINC01233 Gene

GeneCards Summary for LINC01233 Gene

LINC01233 (Long Intergenic Non-Protein Coding RNA 1233) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01233 include Esophagus Squamous Cell Carcinoma and Squamous Cell Carcinoma.

Additional gene information for LINC01233 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01233 Gene

Genomics for LINC01233 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01233 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J022531 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 615.3 -0.2 -225 2 SP2 LINC01233 LOC105376917 ZNF98 ENSG00000270317 LOC101929124 lnc-ZNF492-2 NONHSAG045689.2-002 ZNF729
GH19J022526 Promoter/Enhancer 0.5 Ensembl ENCODE 17.8 -5.2 -5187 2.2 LOC101929124 LINC01233 ENSG00000270317 piR-38580-143 LOC105376917 ZNF98 lnc-ZNF492-2 NONHSAG045689.2-002 ZNF729
GH19J022528 Enhancer 0.2 ENCODE 17.9 -2.8 -2799 2.5 LOC101929124 LINC01233 ZNF98 LOC105376917 lnc-ZNF492-2 NONHSAG045689.2-002 ZNF729
GH19J022541 Enhancer 0.2 FANTOM5 0.4 +9.3 9308 0.2 L13714-233 ZNF98 ZNF257 ZNF492 LINC01233 lnc-ZNF492-2 NONHSAG045689.2-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01233 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01233 Gene

Genomic Locations for LINC01233 Gene
chr19:22,532,626-22,536,548
(GRCh38/hg38)
Size:
3,923 bases
Orientation:
Plus strand
chr19:22,715,428-22,716,296
(GRCh37/hg19)
Size:
869 bases
Orientation:
Plus strand

Genomic View for LINC01233 Gene

Genes around LINC01233 on UCSC Golden Path with GeneCards custom track
LINC01233 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01233 Gene

Proteins for LINC01233 Gene

Post-translational modifications for LINC01233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01233 Gene

Domains & Families for LINC01233 Gene

Gene Families for LINC01233 Gene

genes like me logo Genes that share domains with LINC01233: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01233 Gene

Function for LINC01233 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01233 Gene

Localization for LINC01233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01233 Gene

Pathways & Interactions for LINC01233 Gene

PathCards logo

SuperPathways for LINC01233 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01233 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01233 Gene

Drugs & Compounds for LINC01233 Gene

No Compound Related Data Available

Transcripts for LINC01233 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01233 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C99F_9606 lncRNA 613 4

HGNC: 49756,

RefSeq: NR_110663,

LncBook: HSALNT0257311,

LNCipedia: LINC01233:2,

URS0000548642_9606 lncRNA 568 4

RefSeq: NR_110664,

Ensembl: ENST00000598832 (view in UCSC) ,

LncBook: HSALNT0257310,

LNCipedia: LINC01233:1,

URS000011B602_9606 lncRNA 494 4

Ensembl: ENST00000601708 (view in UCSC) ,

LncBook: HSALNT0257315,

LNCipedia: LINC01233:4,

NONCODE: NONHSAT063797.2,

URS00004C253A_9606 lncRNA 459 4

Ensembl: ENST00000594200 (view in UCSC) ,

LncBook: HSALNT0257321,

LNCipedia: LINC01233:7,

NONCODE: NONHSAT063800.2,

URS00008C1DA6_9606 lncRNA 611 3

LncBook: HSALNT0257313,

LNCipedia: LINC01233:3,

NONCODE: NONHSAT063796.2,

LINC01233 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01233 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01233 Gene

No ASD Table

Relevant External Links for LINC01233 Gene

GeneLoc Exon Structure for
LINC01233

Expression for LINC01233 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01233 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01233 Gene

This gene is overexpressed in Testis (x44.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01233

genes like me logo Genes that share expression patterns with LINC01233: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01233 Gene

Orthologs for LINC01233 Gene

Evolution for LINC01233 Gene

ENSEMBL:
Gene Tree for LINC01233 (if available)
TreeFam:
Gene Tree for LINC01233 (if available)

No data available for Orthologs for LINC01233 Gene

Paralogs for LINC01233 Gene

No data available for Paralogs for LINC01233 Gene

Variants for LINC01233 Gene

Additional dbSNP identifiers (rs#s) for LINC01233 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01233 Gene

Variant ID Type Subtype PubMed ID
dgv140n111 CNV duplication 26073780
dgv3n43 CNV gain 19587683
dgv511e201 CNV deletion 23290073
dgv512e201 CNV deletion 23290073
dgv633e199 CNV deletion 23128226
esv2751784 CNV gain 17911159
esv2758750 CNV gain+loss 17122850
esv34340 CNV loss 17911159
esv3643954 CNV loss 21293372
esv3893182 CNV gain 25118596
esv4924 OTHER complex 18987735
nsv1078307 OTHER inversion 25765185
nsv1120056 OTHER inversion 24896259
nsv436853 CNV insertion 17901297
nsv525240 CNV gain 19592680
nsv578977 CNV loss 21841781
nsv833787 CNV gain 17160897
nsv9681 CNV loss 18304495

Additional Variant Information for LINC01233 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01233

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01233 Gene

Disorders for LINC01233 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01233 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
esophagus squamous cell carcinoma
  • oesophagus squamous cell carcinoma
squamous cell carcinoma
  • epidermoid carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01233: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01233 Gene

Publications for LINC01233 Gene

  1. LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma. (PMID: 24522499) Li J … He J (Gut 2014) 2 3

Products for LINC01233 Gene

Sources for LINC01233 Gene