Aliases for LINC01229 Gene

Subcategory (RNA class) for LINC01229 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01229 Gene

  • Long Intergenic Non-Protein Coding RNA 1229 2 3 5
  • LINC01229 2 168
  • TCONS_00024480 3
  • NONHSAG020070 92
  • HSALNG0112913 167

External Ids for LINC01229 Gene

Summaries for LINC01229 Gene

GeneCards Summary for LINC01229 Gene

LINC01229 (Long Intergenic Non-Protein Coding RNA 1229) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01229 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01229 Gene

Genomics for LINC01229 Gene

GeneHancer (GH) Regulatory Elements for LINC01229 Gene

Promoters and enhancers for LINC01229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J079764 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 73.8 +92.8 92827 9.1 ZBTB40 CTCF ZSCAN5C SP1 GTF2E2 POLR2A ZBTB11 FOS TARDBP REST LINC01229 MAF MAFTRR piR-38579-019
GH16J079758 Enhancer 1 Ensembl ENCODE dbSUPER 65.8 +83.0 82989 1.4 ZNF217 EP300 TCF12 TBX3 CTBP1 FOXA2 FOS FOSL2 NR3C1 FOXA1 LINC01229 MAF MAFTRR piR-38579-019
GH16J079750 Enhancer 0.9 Ensembl ENCODE dbSUPER 58.3 +76.9 76942 5.1 FOS MAFK FOXA1 CTCF FEZF1 HNF4A ZNF366 HNRNPK ZNF512 PCBP2 LINC01229 MAF piR-38579-019 MAFTRR
GH16J079591 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -77.6 -77638 13 HNRNPK ZNF217 CTCF USF1 NCOR1 ZNF10 ZIC2 KDM6A ZBTB10 TCF7 MAF LINC01229 LOC101928230 ENSG00000277214 ENSG00000261472
GH16J079792 Enhancer 0.6 Ensembl ENCODE 22.2 +116.9 116916 1.2 USF1 BHLHE40 RCOR1 CHD2 GATA2 HMBOX1 LINC01229 MAFTRR LINC01228
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01229 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01229 Gene

Genomic Locations for LINC01229 Gene
chr16:79,675,919-79,873,177
(GRCh38/hg38)
Size:
197,259 bases
Orientation:
Plus strand
chr16:79,710,005-79,841,819
(GRCh37/hg19)
Size:
131,815 bases
Orientation:
Plus strand

Genomic View for LINC01229 Gene

Genes around LINC01229 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01229 Gene

Proteins for LINC01229 Gene

Post-translational modifications for LINC01229 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01229 Gene

Domains & Families for LINC01229 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01229 Gene

Function for LINC01229 Gene

Phenotypes From GWAS Catalog for LINC01229 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01229 Gene

Localization for LINC01229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01229 Gene

Pathways & Interactions for LINC01229 Gene

PathCards logo

SuperPathways for LINC01229 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01229 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01229 Gene

Drugs & Compounds for LINC01229 Gene

No Compound Related Data Available

Transcripts for LINC01229 Gene

mRNA/cDNA for LINC01229 Gene

65 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
43 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
17 NONCODE transcripts :
15 LncBook transcripts :
19 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01229 Gene

No ASD Table

Relevant External Links for LINC01229 Gene

GeneLoc Exon Structure for
LINC01229

Expression for LINC01229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01229 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01229

genes like me logo Genes that share expression patterns with LINC01229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01229 Gene

Orthologs for LINC01229 Gene

Evolution for LINC01229 Gene

ENSEMBL:
Gene Tree for LINC01229 (if available)
TreeFam:
Gene Tree for LINC01229 (if available)

No data available for Orthologs for LINC01229 Gene

Paralogs for LINC01229 Gene

No data available for Paralogs for LINC01229 Gene

Variants for LINC01229 Gene

Additional dbSNP identifiers (rs#s) for LINC01229 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01229 Gene

Variant ID Type Subtype PubMed ID
esv26186 CNV gain 19812545
esv2714764 CNV deletion 23290073
esv3572208 CNV gain 25503493
nsv1112498 CNV deletion 24896259
nsv1894 CNV insertion 18451855
nsv573285 CNV gain 21841781
nsv833296 CNV loss 17160897
nsv833297 CNV gain 17160897

Additional Variant Information for LINC01229 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01229

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01229 Gene

Disorders for LINC01229 Gene

Additional Disease Information for LINC01229

No disorders were found for LINC01229 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01229 Gene

Publications for LINC01229 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for LINC01229 Gene

Sources for LINC01229 Gene