Aliases for LINC01227 Gene

Data sources for LINC01227 Gene:

Subcategory (RNA class) for LINC01227 Gene

lncRNA

Aliases for LINC01227 Gene

External Ids for LINC01227 Gene

Previous GeneCards Identifiers for LINC01227 Gene

  • GC16M080605

Summaries for LINC01227 Gene

GeneCards Summary for LINC01227 Gene

LINC01227 (Long Intergenic Non-Protein Coding RNA 1227) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01227 include Hypertension, Essential.

Additional gene information for LINC01227 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01227 Gene

Genomics for LINC01227 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J080568 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 250.7 +3.1 3107 1.8 BCL11A ZIC2 VEZF1 MAFF ZNF341 RXRA ZNF843 KLF9 ZNF316 FOSL1 LINC01227 DYNLRB2 ENSG00000260495 piR-57133-237 CDYL2
GH16J080579 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 -6.9 -6893 4.6 BCL11A FEZF1 POLR2A CUX1 FOXA2 IRF4 RXRA EBF1 CBFB BATF DYNLRB2 CMC2 LINC01227 HSALNG0112943 CDYL2
GH16J080583 Enhancer 0.8 FANTOM5 Ensembl 0.4 -11.1 -11093 1 MAX EBF1 CBFB BATF MTA3 JUNB FOS CREM EED RUNX3 CENPN DYNLRB2 HSALNG0112943 LINC01227 CDYL2
GH16J080564 Enhancer 0.6 Ensembl ENCODE 0.4 +8.4 8407 1.6 GATA2 ZNF366 ZNF512 DYNLRB2-AS1 ENSG00000259867 piR-57133-237 DYNLRB2 LINC01227 CDYL2
GH16J080553 Enhancer 0.2 Ensembl 0.4 +18.5 18507 1 ENSG00000260183 DYNLRB2 LOC105371360 DYNLRB2-AS1 ENSG00000259867 LINC01227 CDYL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01227 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01227 Gene

Latest Assembly
chr16:80,553,248-80,572,808
(GRCh38/hg38)
Size:
19,561 bases
Orientation:
Minus strand

Previous Assembly
chr16:80,601,000-80,606,705
(GRCh37/hg19 by Entrez Gene)
Size:
5,706 bases
Orientation:
Minus strand

chr16:80,600,691-80,606,705
(GRCh37/hg19 by Ensembl)
Size:
6,015 bases
Orientation:
Minus strand

Genomic View for LINC01227 Gene

Genes around LINC01227 on UCSC Golden Path with GeneCards custom track
LINC01227 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01227 Gene

Proteins for LINC01227 Gene

Post-translational modifications for LINC01227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01227 Gene

Domains & Families for LINC01227 Gene

Gene Families for LINC01227 Gene

genes like me logo Genes that share domains with LINC01227: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01227 Gene

Function for LINC01227 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01227 Gene

Localization for LINC01227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01227 Gene

Pathways & Interactions for LINC01227 Gene

PathCards logo

SuperPathways for LINC01227 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01227 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01227 Gene

Drugs & Compounds for LINC01227 Gene

No Compound Related Data Available

Transcripts for LINC01227 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01227 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000A950D_9606 lncRNA 755 4

RefSeq: NR_104666,

Ensembl: ENST00000561719 (view in UCSC) ,

LNCipedia: LINC01227:1,

NONCODE: NONHSAT143896.2,

URS000075CD04_9606 lncRNA 847 3

RefSeq: NR_104665,

LncBook: HSALNT0234140,

LNCipedia: LINC01227:7,

URS0000EF23FD_9606 lncRNA 1512 1

Ensembl: ENST00000663414 (view in UCSC) ,

URS0000EF0BB1_9606 lncRNA 1503 1

Ensembl: ENST00000652792 (view in UCSC) ,

URS0000EF44A5_9606 lncRNA 1431 1

Ensembl: ENST00000662243 (view in UCSC) ,

LINC01227 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01227 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01227 Gene

No ASD Table

Relevant External Links for LINC01227 Gene

GeneLoc Exon Structure for
LINC01227

Expression for LINC01227 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01227 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01227 Gene

This gene is overexpressed in Testis (x51.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01227

genes like me logo Genes that share expression patterns with LINC01227: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01227 Gene

Orthologs for LINC01227 Gene

Evolution for LINC01227 Gene

ENSEMBL:
Gene Tree for LINC01227 (if available)
TreeFam:
Gene Tree for LINC01227 (if available)

No data available for Orthologs for LINC01227 Gene

Paralogs for LINC01227 Gene

No data available for Paralogs for LINC01227 Gene

Variants for LINC01227 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01227 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01227 Gene

Variant ID Type Subtype PubMed ID
dgv542e214 CNV gain 21293372
esv2059408 CNV deletion 18987734
nsv1071301 CNV deletion 25765185
nsv1126435 CNV deletion 24896259
nsv833300 CNV gain 17160897

Additional Variant Information for LINC01227 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01227

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01227 Gene

Disorders for LINC01227 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01227 Gene - From: LNC

Disorder Aliases PubMed IDs
hypertension, essential
  • eht
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01227

genes like me logo Genes that share disorders with LINC01227: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01227 Gene

Publications for LINC01227 Gene

  1. AK098656, a Novel Vascular Smooth Muscle Cell-Dominant Long Noncoding RNA, Promotes Hypertension. (PMID: 29279317) Jin L … Cai J (Hypertension (Dallas, Tex. : 1979) 2018) 74

Products for LINC01227 Gene

Sources for LINC01227 Gene