Aliases for LINC01226 Gene

Subcategory (RNA class) for LINC01226 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for LINC01226 Gene

  • Long Intergenic Non-Protein Coding RNA 1226 2 3 5
  • LINC01226 2 168
  • NONHSAG000905 92
  • NONHSAG000904 92
  • HSALNG0002236 167
  • HSALNG0002238 167
  • NONHSAG000907 92

External Ids for LINC01226 Gene

Previous GeneCards Identifiers for LINC01226 Gene

  • GC01P031987

Summaries for LINC01226 Gene

GeneCards Summary for LINC01226 Gene

LINC01226 (Long Intergenic Non-Protein Coding RNA 1226) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01226 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01226 Gene

Genomics for LINC01226 Gene

GeneHancer (GH) Regulatory Elements for LINC01226 Gene

Promoters and enhancers for LINC01226 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J031505 Promoter/Enhancer 1.1 Ensembl ENCODE 500.7 -0.1 -125 0.6 SIN3A FOS TRIM22 POLR2A RELA TCF12 CBFB USF2 ZNF207 ARNT LINC01226 SERINC2 ENSG00000265961 LDC1P
GH01J031507 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.1 4055 5.3 FOXK2 ZBTB40 POLR2G SP1 NCOR1 TEAD4 EP300 KDM6A ZBTB11 TCF7 SERINC2 ENSG00000229167 TINAGL1 PUM1 LINC01226 LDC1P piR-35674-013
GH01J031522 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +17.7 17728 3 ZIC2 HINFP CREB1 CEBPB ZKSCAN1 CEBPG FOS SAP130 PBX2 SPI1 SERINC2 piR-35674-013 LINC01226 piR-30853-001
GH01J031548 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 +43.3 43307 2.5 FOXK2 ZNF217 CTCF SIN3A NRF1 FOS ZNF639 ZNF10 ZBTB10 AFF1 SERINC2 ENSG00000229167 TINAGL1 RNU6-40P piR-30853-001 piR-31534-016 LINC01226
GH01J031514 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.2 9155 1.1 REST TRIM24 CEBPG MAX CEBPB HNF4A ZNF184 KLF16 ATF3 ZNF512 SERINC2 ENSG00000229167 TINAGL1 LINC01226 piR-35674-013
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01226 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01226 Gene

Genomic Locations for LINC01226 Gene
chr1:31,506,226-31,585,340
(GRCh38/hg38)
Size:
79,115 bases
Orientation:
Plus strand
chr1:31,984,036-31,989,846
(GRCh37/hg19)
Size:
5,811 bases
Orientation:
Plus strand

Genomic View for LINC01226 Gene

Genes around LINC01226 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01226 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01226 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01226 Gene

Proteins for LINC01226 Gene

Post-translational modifications for LINC01226 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01226 Gene

Domains & Families for LINC01226 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01226 Gene

Function for LINC01226 Gene

Phenotypes From GWAS Catalog for LINC01226 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01226 Gene

Localization for LINC01226 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01226 Gene

Pathways & Interactions for LINC01226 Gene

PathCards logo

SuperPathways for LINC01226 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01226 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01226 Gene

Drugs & Compounds for LINC01226 Gene

No Compound Related Data Available

Transcripts for LINC01226 Gene

mRNA/cDNA for LINC01226 Gene

22 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
2 ENA transcripts :
7 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01226 Gene

No ASD Table

Relevant External Links for LINC01226 Gene

GeneLoc Exon Structure for
LINC01226

Expression for LINC01226 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01226 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01226 Gene

This gene is overexpressed in Cervix - Endocervix (x14.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01226

genes like me logo Genes that share expression patterns with LINC01226: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01226 Gene

Orthologs for LINC01226 Gene

Evolution for LINC01226 Gene

ENSEMBL:
Gene Tree for LINC01226 (if available)
TreeFam:
Gene Tree for LINC01226 (if available)

No data available for Orthologs for LINC01226 Gene

Paralogs for LINC01226 Gene

No data available for Paralogs for LINC01226 Gene

Variants for LINC01226 Gene

Additional dbSNP identifiers (rs#s) for LINC01226 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01226 Gene

Variant ID Type Subtype PubMed ID
esv1008042 CNV insertion 20482838
esv2559743 OTHER inversion 19546169
esv2758930 CNV loss 17122850
nsv509147 CNV insertion 20534489
nsv7723 CNV insertion 18451855

Additional Variant Information for LINC01226 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01226 Gene

Disorders for LINC01226 Gene

Additional Disease Information for LINC01226

No disorders were found for LINC01226 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01226 Gene

Publications for LINC01226 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01226 Gene

Sources for LINC01226 Gene